Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4024g00021 ATGGAGGGTAATTCAAATGGCACTTCTTATCTTATGGCTTTTGGAGAAAACAGTGGTGGGCTATGTCCAATGATGATGACGCCTTTAGTGACTTCTCATCATGGCAGTCATCATCCAACAAATCCTAATCTTAATAATAATATTAATAATAATGCAAACACAAACTGTCTCTTCCTTCCTATGCCTTCCACTAGTAACCACGACCTAAACTGTAATAATAGTGGAAGCCCTTCTATCATGCCTGAGAATAACCACAACAACACCATCACCACCAACAACAACAACACTGGGTTAGGGTATTATTTCATGGAGAGCGACCACCACAACAACACTAACACTGGAAGCTCCTCCTCCTCTTCATCTTCTGCTGCCAAGGCCAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACATCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCAGTGAGAATGGCAGGAAATTCTGCTGGATCAGCCTGCATAGGTGAAGATCCTGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTGACCAAGTACGAACAAGAGCTCTCCAAACCCTTAAAGGAAGCCATGCTCTTCCTTCAAAGGATCGAGTGCCAGTTCAAAAATCTTACTATTTCTTCTTCGGACTTTGCTTGTAATGAGGCTACTGATAGGAATGGATCATCTGAAGAAGATGTTGATATACACAACATGGTAGATCCCCAGGCAGAGGACAGGGAATTAAAGGGTCAGCTTTTGCGCAAGTACAGTGGATACTTGGGTAGTTTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGAAAGCTACCTAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCATCTGAATCACAGAAGCTGGCTCTTGCAGAGTCAACAGGTCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGGTGATGGATCCTAGCCCTCAACACTATTACATGGATAATGTTCTGAGCAATTCCTTTCCCATGGATCTCTCCAACCCCATGATCTAG 1134 0.4383 MEGNSNGTSYLMAFGENSGGLCPMMMTPLVTSHHGSHHPTNPNLNNNINNNANTNCLFLPMPSTSNHDLNCNNSGSPSIMPENNHNNTITTNNNNTGLGYYFMESDHHNNTNTGSSSSSSSSAAKAKIMAHPHYHRLLAAYINCQKVGAPPEVVARLEEACASAVRMAGNSAGSACIGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRIECQFKNLTISSSDFACNEATDRNGSSEEDVDIHNMVDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDPSPQHYYMDNVLSNSFPMDLSNPMI 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4024g00021 377 CDD homeodomain 291 343 IPR001356 GO:0003677
Gabi4024g00021 377 Gene3D - 284 346 - -
Gabi4024g00021 377 SMART HOX_1 281 346 IPR001356 GO:0003677
Gabi4024g00021 377 Pfam ELK domain 259 280 IPR005539 GO:0003677
Gabi4024g00021 377 SMART ELK_2 259 280 IPR005539 GO:0003677
Gabi4024g00021 377 Pfam Homeobox KN domain 299 338 IPR008422 GO:0003677|GO:0006355
Gabi4024g00021 377 ProSiteProfiles 'Homeobox' domain profile. 279 342 IPR001356 GO:0003677
Gabi4024g00021 377 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Gabi4024g00021 377 Pfam KNOX2 domain 176 223 IPR005541 GO:0003677|GO:0005634
Gabi4024g00021 377 SMART KNOX1_2 122 166 IPR005540 GO:0003677|GO:0005634
Gabi4024g00021 377 ProSiteProfiles ELK domain profile. 259 279 IPR005539 GO:0003677
Gabi4024g00021 377 SUPERFAMILY Homeodomain-like 281 356 IPR009057 -
Gabi4024g00021 377 ProSitePatterns 'Homeobox' domain signature. 317 340 IPR017970 GO:0000981|GO:0006355
Gabi4024g00021 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 349 - -
Gabi4024g00021 377 FunFam Homeobox protein knotted-1-like 2 284 346 - -
Gabi4024g00021 377 Pfam KNOX1 domain 125 162 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4024g00021 Gabi-Chr4024 169186 173636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4024g00021 81 377 Homeobox Transcription Factor Family AT1G62360 71.521 1.47e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi4024g00021 KNOX2 2.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4024g00021 - - gmx:547796 608.986