Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4024g00018 ATGCTTTCACTCAATTATCTGAATGTAAGCAGTAATGCGCTCTCCCAGATGATTGGTGACATTTTTGCTACTCTTTCTGATCTTGGGACCGTGGATCTATCATTCAATAACTTCTCTATGGAGCTTCCTCCTTCAATTGGTTCATTGTCCAAACTTTCTTCTCTCTTCTTGCAGAATAACCAGTTGACTGGCTCTCTTAACGCTCTTGTTGGTTTGCCTTTGGATACTTTAAATGTTGCAAACAATAATTTCAGTGGATCAATACCTCATGAGCTTAGTTCCATCCATAATTTCATATATGATGGAAATTCTTTTGACAATGGTCCTGCTCCTCATCCGCCAGCATCCACTTCACCTCCACCTACTGGATCTAGTAGTAGTCATCATCATTCTGCATCTGGTTCACATAATAAAACTCGGGGTTCTGCTAAAGAAAATTCTGATGGCCATAAGGGTTTGACTGCGGGGGCCATTGTAGCAATTACTCTAGGTTCAGCGTTGGGGGCTGTTATTGTGCTACTTGCACTTGTTTTTTGTATCCGGAAGCAAAAACGGAAGGAAAAGGGTGCAAGAACTTCTAATGGGAGCCTTCCTCTTGGAATTACTAATGTAACACCTCAGATGCAAGAGCAAAGGGTAAAAAGTGCTGCTGTTATTAAAGATCTCAACCCTCGTCCTGCTGAAAATGTGACAATTGAGAGGGTACCTGTAAAAAGTGGATCTGTAAAGCAGATGAAGTCCCCTATAACTTCCACACCATACACAGTTGCTGCTCTCCAAAGCGCAACAAATAGCTTTAGTCAAGAATTTATTATTGGTGAAGGTTCTCTTGGTAGAGTTTACAAGGCTGATTTCTCCAATGGAAAGATAATGGCGGTTAAGAAGATCGACAACTCGGCACTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCACGCTTGCGGCACCCAAACATTGTTACACTGAGTGGATATTGTGCTGAGCATGGCCAACGGCTTCTAGTTTATGAGTATATAGAAAAAGGGAATCTGCATGACATGCTTCATTTTGCTGAAGATAGCAGTAAAGCTTTATCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAGTACTTGCATGAAGTGTGCTTACCTTCTGTTGTACATAGAAATTTCAAATCAGCAAATATATTACTTGATGAGGAGCTCAATCCTCACCTGTCTGATTGTGGTTTAGCTGCTCTAACACCAAACACCGAGCGGCAGGTTTCAACTCAGATGGTCGGTTCATTCGGTTATAGTGCTCCGGAGTTTGCACTGTCAGGAGTATACACTGTAAAAAGTGATGTTTACAGCTTTGGGGTGGTTATGCTGGAACTATTGACAGGTCGGAAGCCGCTTGACAGTTCAAGGGTTAGATCAGAGCAATCACTAGTGAGATGGGCAACACCTCAGCTCCATGATATAGATGCCTTGGCCAAAATGGTTGATCCTTCTTTGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCCCTCTGTGTTCAGCCTGAACCTGAATTTCGACCTCCCATGTCTGAGGTGGTGCAAGCATTGGTACGGTTAGTGCAAAGAGCAAGTGTGGTTAAAAGGCGACCCAGTGACGAATCTGGTTTTGGTCACAAGACCCCAGACCATGAGGCCATAGACATGTCATTTTAA 1725 0.4319 MLSLNYLNVSSNALSQMIGDIFATLSDLGTVDLSFNNFSMELPPSIGSLSKLSSLFLQNNQLTGSLNALVGLPLDTLNVANNNFSGSIPHELSSIHNFIYDGNSFDNGPAPHPPASTSPPPTGSSSSHHHSASGSHNKTRGSAKENSDGHKGLTAGAIVAITLGSALGAVIVLLALVFCIRKQKRKEKGARTSNGSLPLGITNVTPQMQEQRVKSAAVIKDLNPRPAENVTIERVPVKSGSVKQMKSPITSTPYTVAALQSATNSFSQEFIIGEGSLGRVYKADFSNGKIMAVKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLSGYCAEHGQRLLVYEYIEKGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHKTPDHEAIDMSF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4024g00018 574 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 344 554 - -
Gabi4024g00018 574 Pfam Protein kinase domain 269 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4024g00018 574 MobiDBLite consensus disorder prediction 121 140 - -
Gabi4024g00018 574 ProSiteProfiles Protein kinase domain profile. 266 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4024g00018 574 Gene3D Phosphorylase Kinase; domain 1 229 343 - -
Gabi4024g00018 574 Gene3D Transferase(Phosphotransferase) domain 1 344 561 - -
Gabi4024g00018 574 PANTHER LEUCINE RICH REPEAT KINASE 2 3 547 - -
Gabi4024g00018 574 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 231 343 - -
Gabi4024g00018 574 SUPERFAMILY Protein kinase-like (PK-like) 243 540 IPR011009 -
Gabi4024g00018 574 SUPERFAMILY L domain-like 2 98 - -
Gabi4024g00018 574 Gene3D Ribonuclease Inhibitor 1 154 IPR032675 -
Gabi4024g00018 574 CDD STKc_IRAK 272 543 - -
Gabi4024g00018 574 MobiDBLite consensus disorder prediction 106 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4024g00018 Gabi-Chr4024 127896 132628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4024g00018 1 574 Strubbelig Receptor Gene Family AT4G22130 70.435 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi4024g00018 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4024g00018 - - gmx:100781455 956.436