Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4024g00012 ATGACCACACAACAAAAGAGAAAACCGCCCCATGTTTCCTTTGTTTTCCTTCTCTTACTCCTGTTCATTATTGTCAAAGTCCAAGGTAGTTGCAACCTTGCTCTGGCTTCTTATTACATATGGGAAGGCTCAAATCTCACATACATTAGCAACCTCTTTGAGAAACCAACCTCAGAGATTCTGAAATACAACCCAAACATAAAAAACCCAGATGTTATTCAGAGCCAAACTAGGATCAACGTTCCCTTCTCATGTGAGTGTTTGAACGGTGTGTTTTTAGGCCACACTTTCTCTTACACAACCCAACATGGTGACACCTACACAACAATTGCTCAGGTTGATTTCTCCAACCTCACTACTGAGGAGTGGGTGAGCAGGGTCAATAGTTTTGCACCAATAATGATACCTGACAACGTCAAAATTAATGTCACTATCAACTGCTCCTGCGGAGATAAACATGTGTCCAAGGATTATGGGCTGTTTGCAACATACCCACTTCGGCTTGGTGATAGCTTGCCGGCGGTTGCGGCGGAATCCGGCGTGCCGGCGGAGCTGCTTCAGAGATACAACCCCGGGTCAGATTTCAGTGCTGGGAATGGACTAGTGTTTGTGCCGGCTCGAGATGAAAATGGAAACTTTCCACCACTGCAGTTGGGATCATCAGGAATATCAAGTGGAGCCATTGCTGGTATAGCTGTTGGAGGAGTTGTTGGGATCTTATTGTTGGCACTTCTTCTATATGTTGGGCTATATAGAAGAAAGAAATTGGCTGAAGTATCACATCTCCCAGTACCAGTAGCATCTGAAGATCAGTGTAGTCAACTCCAACATGGTGGTGGAAGCAGCTTGGATAAGGCATCAGAATCTTCTATTGTTGCTTCTTCAAGGTTGACAGGTATTACTGTGGACAAGTCAGTGGAGTTCTCATATGAGGAGCTAGCCAAAGCTACTGATGGCTTTAGCGAGGCTAATATAATTGGTCAAGGTGGCTTTGGATCTGTTTACTATGCTGAGCTTCGAGATGAGAAAGCTGCAATTAAAAAGATGGACATGCAAGCATCAAAAGAATTTCTTGCTGAACTAAAGGTTCTGACGCACGTCCATCACTTGAACTTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTATTTTTGGTTTATGAGTACATTGAGAACGGCAATTTAAGTCAACATTTGCGTGGCTCAGAGAGGGATCCGTTATCATGGCCAGCTAGAGTACAAATTGCCCTGGATGCAGCAAGAGGACTGGAATACATTCATGAGCATACAGTTCCTGTCTACATCCATCGAGATATTAAATCAGCAAACATTTTGATAGACAAAAATTACCGTGGAAAGGTTGCAGATTTCGGTCTGACAAAATTGACCGAATATGGTAGTTCTTCATTACAAACGCGTCTTGTCGGTACATTTGGATATATGCCTCCAGAATATGCTCAATATGGTGAAGTTTCCCCCAAAATAGATGTATATGCTTTTGGAGTTGTTCTCTATGAACTTGTGTCAGGCAAGGAAGCTATTGTCAAGACAAACGAGCCTGGGAATGAATCGAAAGGACTAGTTGCCTTGTTTGAAGAAATTCTTGATCAACCAGACCCAAAAGAAGATCTTCGTAAACTTGTTGACCCTAGGCTTGGTGATAATTACTCTCTTGACTCGGTATTTAAGATATCCCAGCTTGCCAAAGCTTGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTAGTTGCCTTAATGACACTTTCATCTGCAACTGAGGATTGGGATGTTGGCTCCTTCTACGAAAACCAAGCCTTAGTGCATCTAATGTCTGGAAGGTAG 1857 0.4303 MTTQQKRKPPHVSFVFLLLLLFIIVKVQGSCNLALASYYIWEGSNLTYISNLFEKPTSEILKYNPNIKNPDVIQSQTRINVPFSCECLNGVFLGHTFSYTTQHGDTYTTIAQVDFSNLTTEEWVSRVNSFAPIMIPDNVKINVTINCSCGDKHVSKDYGLFATYPLRLGDSLPAVAAESGVPAELLQRYNPGSDFSAGNGLVFVPARDENGNFPPLQLGSSGISSGAIAGIAVGGVVGILLLALLLYVGLYRRKKLAEVSHLPVPVASEDQCSQLQHGGGSSLDKASESSIVASSRLTGITVDKSVEFSYEELAKATDGFSEANIIGQGGFGSVYYAELRDEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSERDPLSWPARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNYRGKVADFGLTKLTEYGSSSLQTRLVGTFGYMPPEYAQYGEVSPKIDVYAFGVVLYELVSGKEAIVKTNEPGNESKGLVALFEEILDQPDPKEDLRKLVDPRLGDNYSLDSVFKISQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4024g00012 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gabi4024g00012 618 ProSiteProfiles LysM domain profile. 36 81 IPR018392 -
Gabi4024g00012 618 ProSiteProfiles Protein kinase domain profile. 320 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4024g00012 618 Gene3D Phosphorylase Kinase; domain 1 305 390 - -
Gabi4024g00012 618 FunFam PTI1-like tyrosine-protein kinase 3 391 604 - -
Gabi4024g00012 618 Pfam LysM domain 42 82 IPR018392 -
Gabi4024g00012 618 Gene3D Transferase(Phosphotransferase) domain 1 391 602 - -
Gabi4024g00012 618 SMART serkin_6 320 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4024g00012 618 Pfam Protein tyrosine and serine/threonine kinase 324 589 IPR001245 GO:0004672|GO:0006468
Gabi4024g00012 618 CDD STKc_IRAK 326 587 - -
Gabi4024g00012 618 FunFam LysM receptor kinase 2 299 390 - -
Gabi4024g00012 618 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Gabi4024g00012 618 SUPERFAMILY Protein kinase-like (PK-like) 300 590 IPR011009 -
Gabi4024g00012 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 604 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4024g00012 Gabi-Chr4024 80622 88793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4024g00012 6 618 Receptor kinase-like Gene Family AT3G21630 56.731 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gabi4024g00012 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4024g00012 - K13429 gmx:100802308 970.689