Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4024g00002 ATGCATGCAGGTTCAACAGAGGAGCACAACACCATGTACTCTATTCCAAACTACACGATCCCCAAGAGTCCAAAGAATGTGGTCATGAACAAAATAGACTCATGCTGGCGAGCCAAAACAAATTGGGCTTCAAACCGTCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCATTGGAGGGAAATTTGGTGAGATATATGAAGTCACTGATCCCTCTGATGACCCTGTAAACCCAAAACCAGGCACACTTCGTTATGGTGTAATCCAAACACAGCCACTTTGGATAACTTTCGCCAAGGACATGGTTATCATGCTAGAGAATGAGCTTATTGTGAATAACTACAAGACTATTGATGGTAGAGGAGCCAAAGTGGAGATTGCAAATGGACCTTGCATTACAATACAAGGTGTTAGCCATGTCATTGTGCATGGAATTAGCATTCATGATTGTAAATTAGGTAAGGCTGCCATGGTGAGGAGCACCACTGACCATGTTGGGTATCGTGAAGGCTCTGATGGAGATGCCATTTCTGTATTTGCTTCCTCCAATATCTGGATTGACCATTGCTTTTTGGCTCGTTGCACCGATGGTCTCGTTGATGTTACTCATGCCTCAACTTCTGTCACCATCTCTAACAATTACTTCACTCAGCATGACAAAGTGATGCTGCTAGGACACAACGATGATTACAGCACAGATAGAATAATGAAAGTAACAGTAGCTTTCAACCGCTTTGCCCGTGGCCTAATACAAAGAATGCCAAGGGTAAGATTTGGTTATGCCCACGTGGTCAACAACAGGTATGACGAGTGGCTCATGTATGCCATTGGTGGCAGTGCCGACCCTACCATTCTTAGTGAAGGGAACTACTTTGTAGCTTCAAATGATTATGTTGCAAAACAGGTTACCAAGAGGGAAACTAGTGGAAACTGGAATAATTGGAAATGGAGGAGTTTTCGGGATGAATTCTTAAATGGTGCTTATTTTGTGCCATCTGGTTACGGAAGTTGTACCCCATTATATTCACCTCCTCAAGCTTTTATAGCGGCCCAAGCATCCATGGTGCCTTTATTAACTCTCAATGCAGGGCCACTGGATTGTGTCGTTAACAAAGCATGTTAA 1131 0.435 MHAGSTEEHNTMYSIPNYTIPKSPKNVVMNKIDSCWRAKTNWASNRQALADCAIGFGKDAIGGKFGEIYEVTDPSDDPVNPKPGTLRYGVIQTQPLWITFAKDMVIMLENELIVNNYKTIDGRGAKVEIANGPCITIQGVSHVIVHGISIHDCKLGKAAMVRSTTDHVGYREGSDGDAISVFASSNIWIDHCFLARCTDGLVDVTHASTSVTISNNYFTQHDKVMLLGHNDDYSTDRIMKVTVAFNRFARGLIQRMPRVRFGYAHVVNNRYDEWLMYAIGGSADPTILSEGNYFVASNDYVAKQVTKRETSGNWNNWKWRSFRDEFLNGAYFVPSGYGSCTPLYSPPQAFIAAQASMVPLLTLNAGPLDCVVNKAC 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 111 127 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 255 274 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 52 69 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 75 100 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 317 341 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 175 196 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 347 370 IPR018082 -
Gabi4024g00002 376 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Gabi4024g00002 376 SMART amb_all 103 300 IPR002022 -
Gabi4024g00002 376 Gene3D - 29 369 IPR012334 -
Gabi4024g00002 376 PANTHER PECTATE LYASE 18-RELATED 26 374 IPR045032 GO:0030570
Gabi4024g00002 376 SUPERFAMILY Pectin lyase-like 29 367 IPR011050 -
Gabi4024g00002 376 Pfam Pectate lyase 113 294 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4024g00002 Gabi-Chr4024 22081 24739 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4024g00002 18 376 Polysaccharide Lyase AT1G11920 70.833 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4024g00002 K01728 - gmx:100803229 654.44