Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00057 ATGAAATTTGGTACTTCCAAGTTCAGTGTTGGCTTTGGAAATGGTAGCTGCCAAACTCGTGTGAGCTTTGCTTCACTTATTAGTTCAAACCTGGACAAGTTTCTAGTTCCTTCAGTTTTCAGGGGTGTCATGGATTCTGGAGAGTTGGATATGAGTGACAAAGAGAAGTTTGAGCTAGATAGAAACGAGGATCCTATGAGTTATTCTACTGGTGTGCCCTCAGATTGGAGATTTGGGGGTGCCAACCTTGCAAATTCATCTGTGGGTTTGGTTGCCATGGGGAATTCTGTAAATGTCAGCAGAGGTGATCTGATTGGTTCTTCTTCAGGTTCCTCTGCTTCAATGGTGGACTCATTTGTTCCAAATTTCTGGGACCATCCCACCAATTCCCAAAACTTGGGATTTTGTGACATTAATGTCCACAACAATGGGGGCTCTTCAAACACAACTGGAATCAGAAAAGATGGCTTTGGCTTTGGAAGAGCTCGTCAGGATCATGGAACACTTGACATGGATTGGAACCTGGCTAATTCTATGTTTAAAGGGGATAGTTTCTTACCAAATGGACCAGGGATATTTCCTCAGAGTTCATCTCAGTTTCCAACTGATTCTGGATTTATTGAGCGGGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGACATGGTGAACTCATATGGGATTCCTCAATCCATGGGCCTTTATGCTGGGACTGGTGGAACAATGCATGGAATAAGAGATGCTCTTACAGGCCATGTAAAATCAGCAACTGGAGGACAATCTCAAGAAAGTGATCTGAATGTAGTTGAAGCTACAAAAGATGTGTCACCATGTGTTGAGCATCTAGCTACTGCAGGAAGCCCCCTCAAGAATGATAAAAGAAGTGAAAGTCATGTTATATCTCAAGATGAAGGGAAGCAAGCTCTTGTTAGGCCTGCTAATGAGTCTGAAAGAGATGAATCTAGTGAGGATGATGGTGGTGGCCATGATGATTCCCCAATGCTGGAGGGTACTAGTGGGGAACCTTCTATTAAAAGAACAAACTCAAAGAAAAGGAAAAGAAATGTACAGGATGCTGATAATGGTAAAGCCAATGGAACTCCAGAACTTCCCAGTGAAGGTGCAAAGGACAACTCTGAGAGTGAACAGAAGGGAGACCAACAACCAACTTCAACAACCAAGGCTTATGGCAAGAATTCCCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGGGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTGAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCCGGATGCAGCAAGGTCACTGGCAAGGCAGTGATGCTAGATGAGATCATTAACTACGTACAATCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCACGTCTGGATTTTAATATTGAAGGTTTTCTTGCCAAAGATATTCTTCACCAACGGCCTAGTCCTTCGTCTGCTCTAGGGTTTCCTCTAGAAATGTCTATGGCTTTTCCTCCAATACACCCATCTCAACCAGGGCTGATTCAATCAATTATTCCTAACATGGCAAACTCATCCGATATCCTTCGAAGAACCGTCCATCCGCAGTTAGCACCCTTGAGTGGAGGATTCAAGGAACCAAATCAGCTTCCTGAGGTGTGGGAGGATGAGCTTCACAATGTTGTACAGATGAGCTTTGCACCAACTGCTCCCCTGAGTAGTCAAGATGTGGATGGTACTATGCCAGCAAGTCAGATGAAAGTTGAACTTTGA 1815 0.4386 MKFGTSKFSVGFGNGSCQTRVSFASLISSNLDKFLVPSVFRGVMDSGELDMSDKEKFELDRNEDPMSYSTGVPSDWRFGGANLANSSVGLVAMGNSVNVSRGDLIGSSSGSSASMVDSFVPNFWDHPTNSQNLGFCDINVHNNGGSSNTTGIRKDGFGFGRARQDHGTLDMDWNLANSMFKGDSFLPNGPGIFPQSSSQFPTDSGFIERAARFSCFSGGNFGDMVNSYGIPQSMGLYAGTGGTMHGIRDALTGHVKSATGGQSQESDLNVVEATKDVSPCVEHLATAGSPLKNDKRSESHVISQDEGKQALVRPANESERDESSEDDGGGHDDSPMLEGTSGEPSIKRTNSKKRKRNVQDADNGKANGTPELPSEGAKDNSESEQKGDQQPTSTTKAYGKNSPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGFLAKDILHQRPSPSSALGFPLEMSMAFPPIHPSQPGLIQSIIPNMANSSDILRRTVHPQLAPLSGGFKEPNQLPEVWEDELHNVVQMSFAPTAPLSSQDVDGTMPASQMKVEL 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00057 604 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 415 486 IPR036638 GO:0046983
Gabi4020g00057 604 MobiDBLite consensus disorder prediction 285 404 - -
Gabi4020g00057 604 CDD bHLH_AtBPE_like 407 492 - -
Gabi4020g00057 604 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 308 519 IPR024097 GO:0006355
Gabi4020g00057 604 Pfam Helix-loop-helix DNA-binding domain 420 468 IPR011598 GO:0046983
Gabi4020g00057 604 SMART finulus 423 473 IPR011598 GO:0046983
Gabi4020g00057 604 MobiDBLite consensus disorder prediction 584 604 - -
Gabi4020g00057 604 FunFam Basic helix-loop-helix transcription factor 414 486 - -
Gabi4020g00057 604 MobiDBLite consensus disorder prediction 386 400 - -
Gabi4020g00057 604 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 417 467 IPR011598 GO:0046983
Gabi4020g00057 604 Gene3D - 414 487 IPR036638 GO:0046983
Gabi4020g00057 604 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00057 Gabi-Chr4020 686895 690642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00057 49 580 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.510 3.06e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4020g00057 HLH 8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00057 - - gmx:100797720 863.603