Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4020g00012 | ATGTTCATGAAGTACCTAACTCTAGTTTATGCTCATCTGAAATGGGTACTAGATTTCCTTCTCTACTATCCCTTTTACAAGCTTCATGATTCTCAGCCACCAATATTTGTAGAGGAGCATAGTATATTCCATCATGAATCCACTCCTGGCTCAGAGAAACATATAGATTGTGGTGTGTGTCTCTGCAAAATTGAAGGAGGAGAGGAGATTAAAGTGCTGAGATGTGACCATGTCTTTCACAGATATTGCTTCGATATATGGGTTGGTTTGAAGAATATCATTTGCCCTCAATGCAAAGAATCAGTGTGTCCAAGAAGGGCTATCATCAGTGAGCATGAAGCTCAAACTTTATTATTCAAGTTTTGTTCTATACGCACTGATGACCGTGAAAGATGGTGGCTACGCTGA | 408 | 0.3971 | MFMKYLTLVYAHLKWVLDFLLYYPFYKLHDSQPPIFVEEHSIFHHESTPGSEKHIDCGVCLCKIEGGEEIKVLRCDHVFHRYCFDIWVGLKNIICPQCKESVCPRRAIISEHEAQTLLFKFCSIRTDDRERWWLR | 135 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4020g00012 | 135 | Pfam | Ring finger domain | 56 | 99 | IPR001841 | - | |
| Gabi4020g00012 | 135 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 99 | IPR001841 | - | |
| Gabi4020g00012 | 135 | SMART | ring_2 | 57 | 98 | IPR001841 | - | |
| Gabi4020g00012 | 135 | SUPERFAMILY | RING/U-box | 56 | 107 | - | - | |
| Gabi4020g00012 | 135 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 36 | 106 | IPR013083 | - | |
| Gabi4020g00012 | 135 | PANTHER | - | 32 | 115 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4020g00012 | Gabi-Chr4020 | 211219 | 211817 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4020g00012 | 25 | 102 | C3H Transcription Factor Family | AT2G18650 | 33.333 | 1.95e-10 | 55.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4020g00012 | K16282 | - | qsa:O6P43_025642 | 127.102 |