Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00009 ATGTTGTTTTGCTCCAATTTCGAATCACTGCAGGCAGCCATACCCTCAAGTTTCAACACACTAGACTACTCTCTTGATCATCATCATCAACATCTTTATCCACAAAATCAACTTCAACATCAACAACACCAGCAACAGCTTATGAAGTTTCGCATAGGCGAAACTTCAAGAGAAAACAACAACATAATGGTGGATTACATGCCTCAAACACAACCACCGCCGCCACCACTACCACCTCCGTCACATATAACATCATCAGGGTTTTATGGTAATGGCAACACTTCTTTTGATAAGCTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCCTTAAACCAAGCCAAGAACTGTGAAGAATCAGGGATCGACCCGGTTTACTTTCTAAAATTCCCTGTGTTAAACGACAAGATGGAGGAACAAAACTTGATGGTGAACCAAGATGCTGATGGTGGTGATGATGGAGAAGCAGAAAATGATGAGAGGTTCAATTTGGTGAGCATGGAAGATAAGTCAAGGGTAGGGGTAACAGCAGAATTAGAAGATGGAATAATCAGAGAAGAAGAAGAAACTCGAGTTTCTGATGACAATAACTCGGTGCAGCAGCTTCGTTTTCTTGGCCATGAAGACCTCCAAAAGAATTCTACAGTGCAGGAAAACAAGAACAAAAGGAAGAGACCAAGAACCGTTAAAACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCATATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGAGCTATAGAGTTTGTGAGGGAACTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGATTACTCGGAGAAGCACAATCAAGACAGGTTGGGGATTCGGGTGTTAATGCTGCAACACAGCAACCTCTAATTCAGCCTCCATTTTTTCCACCTTTGCCAAATGATCAGATGAAGCTTGTGGAGTTGGAGAGTGGGCTTAGAGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGTTTCGATGCCATGATCAAGATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTCCAGCTAATTATCCTTCACACCAACATCACCACCATTGAACAAACTGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGTGCAGAAGATATAGCCAGCTCCGTTCAGCAGATTTTCAGTTTTATCCATGCAAACACTAGCATGTGA 1356 0.4329 MLFCSNFESLQAAIPSSFNTLDYSLDHHHQHLYPQNQLQHQQHQQQLMKFRIGETSRENNNIMVDYMPQTQPPPPPLPPPSHITSSGFYGNGNTSFDKLSFADVMQFADFGPKLALNQAKNCEESGIDPVYFLKFPVLNDKMEEQNLMVNQDADGGDDGEAENDERFNLVSMEDKSRVGVTAELEDGIIREEEETRVSDDNNSVQQLRFLGHEDLQKNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSGVNAATQQPLIQPPFFPPLPNDQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFSFIHANTSM 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00009 451 FunFam Basic helix-loop-helix transcription factor 233 308 - -
Gabi4020g00009 451 PANTHER TRANSCRIPTION FACTOR FAMA 164 442 IPR044283 GO:0003700|GO:0010052
Gabi4020g00009 451 MobiDBLite consensus disorder prediction 218 244 - -
Gabi4020g00009 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 293 IPR011598 GO:0046983
Gabi4020g00009 451 Pfam Helix-loop-helix DNA-binding domain 243 294 IPR011598 GO:0046983
Gabi4020g00009 451 MobiDBLite consensus disorder prediction 211 244 - -
Gabi4020g00009 451 CDD bHLH_AtFAMA_like 245 312 - -
Gabi4020g00009 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 312 IPR036638 GO:0046983
Gabi4020g00009 451 SMART finulus 248 299 IPR011598 GO:0046983
Gabi4020g00009 451 Gene3D - 233 308 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00009 Gabi-Chr4020 167227 169697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00009 52 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.905 2.18e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4020g00009 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00009 K26213 - gmx:100813515 566.614