Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00008 ATGTTGTTTTGCTCCAATTTCGAATCACTGCAGGCAGCCATACCCTCAAGTTTCAACACACTAGACTACTCTCTTGATCATCATCATCAACATCTTTATCCACAAAATCAACTTCAACATCAACAACACCAGCAACAGCTTATGAAGTTTCGCATAGGCGAAACTTCAAGAGAAAACAACAACATAATGGTGGATTACATGCCTCAAACACAACCACCGCCGCCACCACTACCACCTCCGTCACATATAACATCATCAGGGTTTTATGGTAATGGCAACACTTCTTTTGATAAGCTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCCTTAAACCAAGCCAAGAACTGTGAAGAATCAGGGATCGACCCGGTTTACTTTCTAAAATTCCCTGTGTTAAACGACAAGATGGAGGAACAAAACTTGATGAGGTTCAATTTGGTGAGCATGGAAGATAAGTCAAGGGTAGGGGTAACAGCAGAATTAGAAGATGGAATAATCAGAGAAGAAGAAGAAACTCGAGTTTCTGATGACAATAACTCGGTGCAGCAGCTTCGTTTTCTTGGCCATGAAGACCTCCAAAAGAATTCTACAGTGCAGGAAAACAAGAACAAAAGGAAGAGACCAAGAACCGTTAAAACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCATATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGAGCTATAGAGTTTGTGAGGGAACTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGATTACTCGGAGAAGCACAATCAAGACAGGTTGGGGATTCGGGTGTTAATGCTGCAACACAGCAACCTCTAATTCAGCCTCCATTTTTTCCACCTTTGCCAAATGATCAGATGAAGCTTGTGGAGTTGGAGAGTGGGCTTAGAGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGTTTCGATGCCATGATCAAGATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTCCAGCTAATTATCCTTCACACCAACATCACCACCATTGAACAAACTGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGTGCAGAAGATATAGCCAGCTCCGTTCAGCAGATTTTCAGTTTTATCCATGCAAACACTAGCATGTGA 1305 0.4322 MLFCSNFESLQAAIPSSFNTLDYSLDHHHQHLYPQNQLQHQQHQQQLMKFRIGETSRENNNIMVDYMPQTQPPPPPLPPPSHITSSGFYGNGNTSFDKLSFADVMQFADFGPKLALNQAKNCEESGIDPVYFLKFPVLNDKMEEQNLMRFNLVSMEDKSRVGVTAELEDGIIREEEETRVSDDNNSVQQLRFLGHEDLQKNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSGVNAATQQPLIQPPFFPPLPNDQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFSFIHANTSM 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00008 434 FunFam Basic helix-loop-helix transcription factor 216 291 - -
Gabi4020g00008 434 Pfam Helix-loop-helix DNA-binding domain 226 277 IPR011598 GO:0046983
Gabi4020g00008 434 Gene3D - 205 291 IPR036638 GO:0046983
Gabi4020g00008 434 SMART finulus 231 282 IPR011598 GO:0046983
Gabi4020g00008 434 MobiDBLite consensus disorder prediction 198 227 - -
Gabi4020g00008 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 291 IPR036638 GO:0046983
Gabi4020g00008 434 CDD bHLH_AtFAMA_like 228 295 - -
Gabi4020g00008 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 276 IPR011598 GO:0046983
Gabi4020g00008 434 MobiDBLite consensus disorder prediction 201 227 - -
Gabi4020g00008 434 PANTHER TRANSCRIPTION FACTOR FAMA 145 425 IPR044283 GO:0003700|GO:0010052
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00008 Gabi-Chr4020 167227 169697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00008 52 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.374 8.29e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4020g00008 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00008 K26213 - gmx:100813515 548.125