Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00007 ATGGAGAAAGATCACGACTATTCGGCAGCCATACCCTCAAGTTTCAACACACTAGACTACTCTCTTGATCATCATCATCAACATCTTTATCCACAAAATCAACTTCAACATCAACAACACCAGCAACAGCTTATGAAGTTTCGCATAGGCGAAACTTCAAGAGAAAACAACAACATAATGGTGGATTACATGCCTCAAACACAACCACCGCCGCCACCACTACCACCTCCGTCACATATAACATCATCAGGGTTTTATGGTAATGGCAACACTTCTTTTGATAAGCTCAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCCTTAAACCAAGCCAAGAACTGTGAAGAATCAGGGATCGACCCGGTTTACTTTCTAAAATTCCCTGTGTTAAACGACAAGATGGAGGAACAAAACTTGATGGTGAACCAAGATGCTGATGGTGGTGATGATGGAGAAGCAGAAAATGATGAGAGGTTCAATTTGGTGAGCATGGAAGATAAGTCAAGGGTAGGGGTAACAGCAGAATTAGAAGATGGAATAATCAGAGAAGAAGAAGAAACTCGAGTTTCTGATGACAATAACTCGGTGCAGCAGCTTCGTTTTCTTGGCCATGAAGACCTCCAAAAGAATTCTACAGTGCAGGAAAACAAGAACAAAAGGAAGAGACCAAGAACCGTTAAAACAAGTGAAGAAGTTGAGAGCCAGCGCATGACTCATATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGAGCTATAGAGTTTGTGAGGGAACTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGGAGGAGATTACTCGGAGAAGCACAATCAAGACAGGTTGGGGATTCGGGTGTTAATGCTGCAACACAGCAACCTCTAATTCAGCCTCCATTTTTTCCACCTTTGCCAAATGATCAGATGAAGCTTGTGGAGTTGGAGAGTGGGCTTAGAGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTAGAAGTGAAGCTTCTAGGTTTCGATGCCATGATCAAGATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAGACCATTGCTGCACTTGAAGATCTCCAGCTAATTATCCTTCACACCAACATCACCACCATTGAACAAACTGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGTGCAGAAGATATAGCCAGCTCCGTTCAGCAGATTTTCAGTTTTATCCATGCAAACACTAGCATGTGA 1347 0.4336 MEKDHDYSAAIPSSFNTLDYSLDHHHQHLYPQNQLQHQQHQQQLMKFRIGETSRENNNIMVDYMPQTQPPPPPLPPPSHITSSGFYGNGNTSFDKLSFADVMQFADFGPKLALNQAKNCEESGIDPVYFLKFPVLNDKMEEQNLMVNQDADGGDDGEAENDERFNLVSMEDKSRVGVTAELEDGIIREEEETRVSDDNNSVQQLRFLGHEDLQKNSTVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSGVNAATQQPLIQPPFFPPLPNDQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFSFIHANTSM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00007 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 290 IPR011598 GO:0046983
Gabi4020g00007 448 PANTHER TRANSCRIPTION FACTOR FAMA 161 439 IPR044283 GO:0003700|GO:0010052
Gabi4020g00007 448 SMART finulus 245 296 IPR011598 GO:0046983
Gabi4020g00007 448 Gene3D - 230 305 IPR036638 GO:0046983
Gabi4020g00007 448 MobiDBLite consensus disorder prediction 215 241 - -
Gabi4020g00007 448 FunFam Basic helix-loop-helix transcription factor 230 305 - -
Gabi4020g00007 448 Pfam Helix-loop-helix DNA-binding domain 240 291 IPR011598 GO:0046983
Gabi4020g00007 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 239 305 IPR036638 GO:0046983
Gabi4020g00007 448 MobiDBLite consensus disorder prediction 208 241 - -
Gabi4020g00007 448 CDD bHLH_AtFAMA_like 242 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00007 Gabi-Chr4020 167227 170006 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00007 49 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.905 1.38e-149 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4020g00007 HLH 9.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00007 K26213 - gmx:100813515 576.63