Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00005 ATGTCAGCGGCGTCGCCGTCTCCGGCATCTTCCACCGCTGCGCCACCACCACAAACTAACTCCTCCGACACTAGTCTGCCACCGTCAACCGCCGCCACCCCACTACCGCAACAATCCTTTTCCCCTACACCTAAGAGTTCAACTTCACCACCGCCATCAACCCCACCACCATCTCAGTCCCCCCCACCTCCGGCCACCCCTTCGGCTCCTCCTCCCGCCGTGCCGTCGCCGCCTCCGCCGTCACCACCGCCTAGCCTTGCAGCTCCCCCTTTGTCAACCTCACCTCCATTGCCGCCTCCTGTAGTTACCCCTCCAACCCCACCATCAGCTCCTCCACCATCACAACAACCGCCGCCGCCATCTTCTCCGGGACGTCCATTACCGCCACCTCAATCACCGGTTCCGCCAAGAAGCTCTCCATCACCACCACCACCATCAGCTCCACCGCCATCAAACCCACCTAACAACCCATCTCCTCCACCACCACCGGATAATTCATCCCCTCCTCCAGCCGCAGCACCGCCACCCCGAATTTCGCCTCCACGGCCACCGTCTGCACCACCTCCCAGAAACTCAATTCCACCGCATGCATCACCACCGGTGAATAATTCAACTCCACCTGTGAATTCAACCCCACCGCCGGTGGCTGTGCCGCCACCAAGGTCATCAGCATCACCACCATCACAATCATCATCACCACCACCAGCATCCACCCCTCCTTCTCCTCCTCCTAAGATTAGTCCTCCTACCACACCTAGTTCTCAACCATCTCCACCTTCAAATTCTACACCAAAGCCACCTCCCCCTATCATTCAATTGGCGCCTCCTCCACGCTCACCTGTTTCACCACCACCACCACCATCACAGAATGTATCAGATAACTCAAGCTCTGGAACTGGAGGTAGTGGTGGAATTGGCACTGGTGGTGCAGTGGCCATTGGTGTTATAGTGGCTGGAATTCTGTTGATTGGCTTCATTGGAGTTGCTATTTGGTGCATGAGGAGGCAAAAGAAAAAGGTGCCTGCTAATGGTGGTTATGTCATACCATCCAATCTTGCCTCTTCACCTGAATCAGATTCATCCTATTTTAAGACACATTCCTCAGCTCCTCTAGTACAAAGTGGCTCTGGCAGTGATGTTGTATATACACCATCTGAGTCTGGTGGACTAGGCAACTCAAGGTCATGGTTTTCATATGAAGAACTAATCAAGGCCACAAATAATTTCTCAAGTCAAAATTTTTTGGGTGAGGGTGGATTTGGTTCTGTATATAAAGGATACCTACCTGATGGCAGAGAGATAGCAGTCAAACAGCTGAAAATTGGCGGGGGTCAGGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGCGTACATCATCGCCATTTGGTTTCTTTAGCGGGATATTGCATTGAAGATAACAGAAGACTACTTGTCTATGAATATGTCCCTAACAATAACCTTTATTTTCATCTACATGGGGCAGGTCAGCCTGTGCTAGACTGGGCAAACCGTGTTAAAATCGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCATCAAACATTCTTTTGGATTACAACTATGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACACATATAACCACACGAGTCATGGGAACTTTTGGGTATGTCGCCCCTGAATATGCGTCAAGTGGAAAATTGACTGAGAAATCTGATGTATATTCTTTTGGAGTTGTGCTTTTGGAGCTAATTACCGGACGGAAGCCAGTAGATGACTCCCAACCCTTGGGAGACGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTGAGTAATGCACTTGATACTGAGGATTTTGAGAGTTTGATAGATCCAAGGCTAGAAAAGAACTATGTTGAAAGTGAATTATTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGACAGCTTAGCAGGTTCAGATCTAACTAATGGAATGCGACTTGGGGACAGCGAGGCGTTTGATTCTGCGCAGCAATCTGAAGAAATAAGATTATTTCGGAGGATGGCATTTGGGAGTCAAAATTATAGCACGGACTTTTTTAGCCATGCTAGTTTAAATACATGA 2211 0.4939 MSAASPSPASSTAAPPPQTNSSDTSLPPSTAATPLPQQSFSPTPKSSTSPPPSTPPPSQSPPPPATPSAPPPAVPSPPPPSPPPSLAAPPLSTSPPLPPPVVTPPTPPSAPPPSQQPPPPSSPGRPLPPPQSPVPPRSSPSPPPPSAPPPSNPPNNPSPPPPPDNSSPPPAAAPPPRISPPRPPSAPPPRNSIPPHASPPVNNSTPPVNSTPPPVAVPPPRSSASPPSQSSSPPPASTPPSPPPKISPPTTPSSQPSPPSNSTPKPPPPIIQLAPPPRSPVSPPPPPSQNVSDNSSSGTGGSGGIGTGGAVAIGVIVAGILLIGFIGVAIWCMRRQKKKVPANGGYVIPSNLASSPESDSSYFKTHSSAPLVQSGSGSDVVYTPSESGGLGNSRSWFSYEELIKATNNFSSQNFLGEGGFGSVYKGYLPDGREIAVKQLKIGGGQGEREFKAEVEIISRVHHRHLVSLAGYCIEDNRRLLVYEYVPNNNLYFHLHGAGQPVLDWANRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNYEARVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDDSQPLGDESLVEWARPLLSNALDTEDFESLIDPRLEKNYVESELFCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAGSDLTNGMRLGDSEAFDSAQQSEEIRLFRRMAFGSQNYSTDFFSHASLNT 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00005 736 PRINTS Pistil-specific extensin-like signature 95 118 IPR003882 -
Gabi4020g00005 736 PRINTS Pistil-specific extensin-like signature 130 148 IPR003882 -
Gabi4020g00005 736 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 321 717 IPR047117 -
Gabi4020g00005 736 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Gabi4020g00005 736 Gene3D Phosphorylase Kinase; domain 1 384 484 - -
Gabi4020g00005 736 ProSiteProfiles Protein kinase domain profile. 409 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4020g00005 736 SMART serkin_6 409 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4020g00005 736 CDD STKc_IRAK 415 685 - -
Gabi4020g00005 736 Gene3D Transferase(Phosphotransferase) domain 1 485 696 - -
Gabi4020g00005 736 FunFam Proline-rich receptor-like protein kinase PERK8 381 484 - -
Gabi4020g00005 736 SUPERFAMILY Protein kinase-like (PK-like) 391 680 IPR011009 -
Gabi4020g00005 736 MobiDBLite consensus disorder prediction 1 44 - -
Gabi4020g00005 736 MobiDBLite consensus disorder prediction 1 303 - -
Gabi4020g00005 736 MobiDBLite consensus disorder prediction 45 290 - -
Gabi4020g00005 736 Pfam Protein tyrosine and serine/threonine kinase 412 680 IPR001245 GO:0004672|GO:0006468
Gabi4020g00005 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Gabi4020g00005 736 FunFam proline-rich receptor-like protein kinase PERK8 485 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00005 Gabi-Chr4020 137793 143423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00005 280 736 Trihelix Transcription Factor Family AT5G38560 63.889 0.0 626
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gabi4020g00005 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00005 - - vun:114173712 768.844