Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4020g00003 ATGAGGGGTGAGAGGAGAAGGAAGCTGCATCTTAGCAAGATCTACTCATTCGCATGTGGGAAAGCATCTTTTAAGAGAGATCACTCACAGATTGGAGCACGTGGCTATTCCAGGGTTGTGCTCTGCAATGAACCAGAGAGCTTTGATTCTGTGAATAGGAATTATGCAGATAATTCTGTGAGTTCCACAAAGTATACTCCTGCCACTTTCTTGCCCAAGTCACTTTTTGAGCAGTTTAGGAGGGTTGCTAATTTCTATTTTTTGGTAACTGGCATCTTGGCCTTCACAAAGCTTGCTCCTTACGCAGCTGTCAGTGCTATCCTTCCTCTGATTGTTGTTGTTGGGGCAACTATGGTTAAAGAGGGTATTGAAGATTGGCGTCGGAAAAAGCAGGATAGTGAGGTGAATAATAGAAAAGTTAAAGTGCATAAAGGGCATGGAACTTTCGAATATATTGAATGGAAGAATCTGAAGGTGGGGCATATAGTAAAGATAGCGAAGGACGAATTCTTCCCTGCAGACCTCCTACTGCTTTCATCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTAGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGCAACTTCTTCCTTACATGAGGACTCTGAGTTCAGTGATTTTAAAGCTACAATCAAATGTGAAGACCCAAATGCAAATCTATATTCATTTGTTGGGAGCATGGAGTTTGAAGAGCAACAATACGCCCTTTCTCCTCAGCAACTTCTTCTAAGAGACTCTAAACTTCGTAATACGGACTACATATTTGGAGCTGTCATCTTCGCTGGTCCTGACACGAAGGTTATTCAAAATTCTACTGATCCCCCTTCAAAGAGAAGCAAAATTGAGCGGAAGATGGATAGAGTTATCTACTTCTTGTTTTGTATTTTATTTCTAATGGCATTTGTTGGATCTATTTTCTTTGGCATTGCAACTAAAGATGACTTGGACAACGGGTTGATGAAAAGATGGTATCTAAGACCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCACCTGCTGCTGCTATATTTCATTCTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCATCTCATTGTATGTATCAATTGAAATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCTGACAAACCGGCCTATGCCCGCACTTCAAACTTGAATGAGGAACTTGGCCAAGTCGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCGTATGGCCGTGGCGTTACAGAGGTTGAAATGGCCATGAATATAAAAAATGGTTCTCCTTTGATAAATGACATCGGGGAATCTCCTGATAGAAATGCACCCATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTGATGCAGATGTTATACGGAATTTTTTCCGCTTGTTGGCAATCTGTCATACAGCCATTCCAGAAGTGGATGAAGACACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCGAGAGAAGTTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCGATGTATGAATTGGATCCAGTCTCTGGTGACAAAGTTGAAAGGGTGTACAAACTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGAAAGATGAAGAGGGGAGAATTGTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGGATGGGAGGGAGTTTGAAGAGAAAACCTTGGAACATGTGCATGAATATGCTGATGCAGGTCTAAGGACCCTGATTCTGGCGTACCGTGTACTAGATGAAGAACAATACGAGGAGTTTAATAATAAACTTTCTCAAGCAACAAATTCTGTTACTGAAGATCGGGAAACACTGATTGAGGAAGTATCAGATAAGATTGAGAGGAATCTAATCCTTCTTGGTGCCACTGCTGTAGAAGACAAGCTCCAAAATGGGGTACCCAATTGCATTGACAAGCTTGCCCAAGCTGGAATTAAGATCTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTTGCTTGTAGTTTGCTTAGACAAGGAATGAAGCAGATTATAATTCAATTGGAGACTCCAGAAATTCGAGCATTGGAGAAGGGCGGAGACAAGACAGCTATTGCCAAGGCTTCAAGGGAAAGTATCCGCCATCAGATATCTGAAGGTGGTCAACAGATTACTGCCTCCAGAGGAACCTCTGAGCAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCTCTAGAGGATAATATGAAGAACATGTTTCTAGAGCTTGCAATTCATTGTGCATCTGTTATCTGCTGCCGCTCGTCCCCAAAGCAGAAGGCACTGGTCACTAGACTGGTCAAAACTGGAACTGGTAAAACTACTTTAGCTATCGGGGATGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGGATTGGAATCAGTGGCGTGGAGGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGTTATTTGGAGAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATCTCATCAATGATCTGCTATTTTTTCTACAAGAATATCACATTTGGCTTTACTCTATTCTTATATGAGGTTTATGCATCATTCTCTGGACAGCCTGCTTACAATGACTGGGCTTTGTCGCTCTATAATGTCTTCTTTTCATCACTTCCTGTGGTTGCCCTTGGGGTCTTTGACCAGGATGTCTCAGCTCGGTACTGTCTGAAGTTTCCGATGTTATATCAAGAAGGTGTTCAAAATGTCCTCTTTAGCTGGCGTCGAATACTCAGCTGGATGCTTAATGGTTTTATGAGTGCCATAATAATTTTCTTCTTCTGCACAAAAGCAATGGAGATTCAGGCCTTTGATGAGGAGGGAAGAACTGCTGGTAGGGATATACTAGGAGCAACAATGTATACTTGCGTGGTTTGGGTTGTAAACTTGCAGATGGCACTTGCTATAAATTACTTCACCTTGATTCAACATATTTTTCTCTGGGGCTCCATTGCTCTCTGGTATCTTTTCCTCCTTGCATATGGAGCAATACCTCCGAGCTTTTCTACAAATGCTTACAAAGTCTTCATTGAAACTCTGGCTCCAGCTCCTTCCTATTGGATTGTGACATTGTTTGTGGTTATCTCAACACTTATACCATACTTCACTTACTCAGCATTGCAAATGCGGTTCTTTCCTATGTATCACGAGATTGTACAATGGATAAGGCATGAAGGGATGACAAATGATCCTGAGTTCTGTGATATGGTGCGGCAGAAATCATTGCGACCGACAACTGTTGGTTCAACAGCTCGCTTAGCTGCTAAGACTAATGACATAAGAGACAGTTCTTCTAACCATAGATAA 3573 0.4125 MRGERRRKLHLSKIYSFACGKASFKRDHSQIGARGYSRVVLCNEPESFDSVNRNYADNSVSSTKYTPATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYAAVSAILPLIVVVGATMVKEGIEDWRRKKQDSEVNNRKVKVHKGHGTFEYIEWKNLKVGHIVKIAKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEATSSLHEDSEFSDFKATIKCEDPNANLYSFVGSMEFEEQQYALSPQQLLLRDSKLRNTDYIFGAVIFAGPDTKVIQNSTDPPSKRSKIERKMDRVIYFLFCILFLMAFVGSIFFGIATKDDLDNGLMKRWYLRPDDSTIFFDPKRAPAAAIFHSLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAYARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVEMAMNIKNGSPLINDIGESPDRNAPIKGFNFTDERIMNGNWVNEPDADVIRNFFRLLAICHTAIPEVDEDTGNVSYEAESPDEAAFVIAAREVGFEFYKRTQTSLSMYELDPVSGDKVERVYKLLNVLEFNSSRKRMSVIVKDEEGRIVLLCKGADSVMFERLAKDGREFEEKTLEHVHEYADAGLRTLILAYRVLDEEQYEEFNNKLSQATNSVTEDRETLIEEVSDKIERNLILLGATAVEDKLQNGVPNCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQIIIQLETPEIRALEKGGDKTAIAKASRESIRHQISEGGQQITASRGTSEQAFALIIDGKSLAYALEDNMKNMFLELAIHCASVICCRSSPKQKALVTRLVKTGTGKTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWALSLYNVFFSSLPVVALGVFDQDVSARYCLKFPMLYQEGVQNVLFSWRRILSWMLNGFMSAIIIFFFCTKAMEIQAFDEEGRTAGRDILGATMYTCVVWVVNLQMALAINYFTLIQHIFLWGSIALWYLFLLAYGAIPPSFSTNAYKVFIETLAPAPSYWIVTLFVVISTLIPYFTYSALQMRFFPMYHEIVQWIRHEGMTNDPEFCDMVRQKSLRPTTVGSTARLAAKTNDIRDSSSNHR 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4020g00003 1190 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 693 IPR023299 GO:0000166
Gabi4020g00003 1190 FunFam Phospholipid-transporting ATPase 534 692 - -
Gabi4020g00003 1190 NCBIfam HAD-IC family P-type ATPase 826 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi4020g00003 1190 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Gabi4020g00003 1190 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Gabi4020g00003 1190 NCBIfam phospholipid-translocating P-type ATPase 55 1142 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Gabi4020g00003 1190 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Gabi4020g00003 1190 FunFam Phospholipid-transporting ATPase 116 286 - -
Gabi4020g00003 1190 Pfam Cation transport ATPase (P-type) 525 618 - -
Gabi4020g00003 1190 FunFam Phospholipid-transporting ATPase 692 897 - -
Gabi4020g00003 1190 Gene3D - 692 897 IPR023214 -
Gabi4020g00003 1190 SFLD Haloacid Dehalogenase 406 908 - -
Gabi4020g00003 1190 Gene3D - 115 286 - -
Gabi4020g00003 1190 SUPERFAMILY Calcium ATPase, transduction domain A 140 283 IPR008250 -
Gabi4020g00003 1190 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 43 1146 - -
Gabi4020g00003 1190 Pfam Phospholipid-translocating P-type ATPase C-terminal 885 1135 IPR032630 -
Gabi4020g00003 1190 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1135 IPR023298 -
Gabi4020g00003 1190 SUPERFAMILY HAD-like 412 901 IPR036412 -
Gabi4020g00003 1190 Gene3D - 536 691 IPR023299 GO:0000166
Gabi4020g00003 1190 Pfam Phospholipid-translocating ATPase N-terminal 42 106 IPR032631 -
Gabi4020g00003 1190 CDD P-type_ATPase_APLT_Dnf-like 57 1017 - -
Gabi4020g00003 1190 SFLD p-type atpase 406 908 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4020g00003 Gabi-Chr4020 124053 131524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4020g00003 9 1185 Primary Pumps ATPases AT1G68710 73.784 0.0 1898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4020g00003 K01530 - gmx:100811892 2147.47