Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4018g00001 ATGGAGCTGAGCTTGGATTTGTGTTTGACCTTTGCACCCAGAACCATTTCTGAGCTTCTTGGCGAGGTTTCTAAGAGCAAAGAAGGGTCTCAGAAAATGACCATGCTTGAGGACTACGTCAAAAAGTTGGAAGATGAGATGAGGAAGATCGAGGCCTTCAAACGTGAGCTTCCTCTATGCATGATCCTCGTAAACTATGCTATAGCTAGATTGAAGGAGGAAATAGAAGGGTGTATGAGAATGCAAGATGAACCCGTGGTTGAAGAATTGATGCCACTGATGAAAACCAATTTTGAAGGAAAAGGGTCATTGAACATGTGGAAGGAAATTAGTGACAAGAAGAACTGGATGAGCTCTGCTCAGCTATGGAGCGTTGAAACCAAATTGAGAACTGAAGAAGATAATTGGTCTGTGCCCGAGAACCCAATTGAACCACCGAACGAGACCAACAACAATGGAAGAGCATTTCTAGCATTCAGTGGAAACTCAAAGACAGTGAAAAGGGATGAAAAGGAGGTTTCACATTTTCCTAAACTTAGTTTGATGACTCCAGAGTTTGAACAGAATCATAGAAAATCCAAAAGGGGTTGTGGAGGTAGTCATGATTCGTCTTTGATTACAAGCAAGATTAAGGGTCAACCGCAACAACAACAACAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAGCTTCATCGGCGATTTGTTGATGCGCTTCATCAATTGGGAGGACCACAAGTGGCCACTCCTAAGCAGATTAGAGAATTGATGCAGGTGGGAGGCTTGACAAATGATGAAGTCAAAAGCCATTTGCAAAAGTATAGGCTTCATTTTAGAAGAGTTCCAGACTCTTCAGTTGGCCAAGCTAATAAAGGCTTATGGATGGCACAAGATCAATGTGGACATAAATCAAAGGGAAACTTATCAGGTTCTCCACAAGGTCCTCTCTTTCTAAGAGGGTCTGCTAAAGCTCTTTCAAGTTCTGGACAGAGCAGTGTGAACGCTGAAGATGATGAGCAATCAGATTGCCACAGTTGGAAAAGTGGGCTACACTAG 1059 0.4315 MELSLDLCLTFAPRTISELLGEVSKSKEGSQKMTMLEDYVKKLEDEMRKIEAFKRELPLCMILVNYAIARLKEEIEGCMRMQDEPVVEELMPLMKTNFEGKGSLNMWKEISDKKNWMSSAQLWSVETKLRTEEDNWSVPENPIEPPNETNNNGRAFLAFSGNSKTVKRDEKEVSHFPKLSLMTPEFEQNHRKSKRGCGGSHDSSLITSKIKGQPQQQQQNPRKQRRCWSPELHRRFVDALHQLGGPQVATPKQIRELMQVGGLTNDEVKSHLQKYRLHFRRVPDSSVGQANKGLWMAQDQCGHKSKGNLSGSPQGPLFLRGSAKALSSSGQSSVNAEDDEQSDCHSWKSGLH 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4018g00001 352 FunFam Myb family transcription factor 222 280 - -
Gabi4018g00001 352 MobiDBLite consensus disorder prediction 200 225 - -
Gabi4018g00001 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 348 IPR044787 GO:0003700|GO:0006355
Gabi4018g00001 352 Gene3D - 222 280 - -
Gabi4018g00001 352 MobiDBLite consensus disorder prediction 184 228 - -
Gabi4018g00001 352 MobiDBLite consensus disorder prediction 303 352 - -
Gabi4018g00001 352 MobiDBLite consensus disorder prediction 133 153 - -
Gabi4018g00001 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 280 IPR017930 -
Gabi4018g00001 352 Coils Coil 36 56 - -
Gabi4018g00001 352 Pfam Myb-like DNA-binding domain 225 276 IPR001005 -
Gabi4018g00001 352 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677
Gabi4018g00001 352 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4018g00001 Gabi-Chr4018 26907 30513 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4018g00001 1 296 G2-like Transcription Factor Family AT4G37180 41.060 3.38e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi4018g00001 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4018g00001 - - lang:109332341 441.425