Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4015g00004 ATGCTTCACAGTCTGCGTGATGACCTTGATTACCTAGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATAAATGAAGCTTATGTGGATGTGAAAAGCAGACCATATAAAAATATCCGAATCAAGCACACATACATTCTGGAGGATCCTTTTGATGATCCTCCTCAACTAGCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCCAAAGATGAGGTTGATGATGACGTGCGACTTGAAGATGATTGGGTGCCAATGGATGAACAATTGGACCCAACAGAGCTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGATATTAAGCCTCCAGACAATGTACTATTTGTCTGTAAATTGAACCCTGTTACTGAGGATGATGACTTGCATACAATATTTTCACGCTTTGGGACTGTATCCTCGGCTGAAATCATCCGTGATCAAAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAGGCGTGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTCTGGTCACAATACAGGCGAAAAGATCAAAGGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTATAGATCATATTGCCAAGAATTGCAATGGAGATGCTACAATGAAACAACCTGCAAAATACATCTTGAAGGATGATAATGCCCAACATGGTGGAGATAATGCAAGATACGAAATGGTTTTTGATGGAGACAAGACAGAAAGTTCAAGGCCAGATGTAAAATACCATAGTCATGACAGGGATGATCTAGTTGAGAAAAAGGATAGGAAGGAAAATTTTAAAGATCATAGAGGTCGTAGGGATCAGGAGATGGTAGGCTCAAACAGCAGAGATAGGTATGGTGATAGAAGCAGAGGGAATGGGAGAAATGGAGATGATAAAGCGCGATCTGAAAGAGATACAAGAGATTTGGAAGCTGACAAGAAAGACCGAGAGAAGTATATGGGAAGACAGAGAGAGGATGACAACAGACGGAAAGACGAGCTAGACTCGAGAAAAAGAGACTTAGATGATAGATACATAGAAAGACAGGGTAGTCGAGATTGTAGAAGAAAAACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGATCTGAAGACAGTGGAAGGCAAGATGTGAAGATTGATTCCAGAAGAAGAAAAAGAAGCCCGGGTGAAGATTACAAACATGGAAGGGAGGGTGAAGATTACAGACATGGAAGGGAAGAACGTGGACATAGAAGACAAGATACTGAATCTGATGACTACCCTCGTAGGAGGCATCATGGTGAAAGGAGATGA 1449 0.4106 MLHSLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDVKSRPYKNIRIKHTYILEDPFDDPPQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLDPTELEEVIRSKEAHSRAVVLESIGDIPDADIKPPDNVLFVCKLNPVTEDDDLHTIFSRFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQRGKGGGCFKCGSIDHIAKNCNGDATMKQPAKYILKDDNAQHGGDNARYEMVFDGDKTESSRPDVKYHSHDRDDLVEKKDRKENFKDHRGRRDQEMVGSNSRDRYGDRSRGNGRNGDDKARSERDTRDLEADKKDREKYMGRQREDDNRRKDELDSRKRDLDDRYIERQGSRDCRRKTDSSHLERRNDRDYRKRSEDSGRQDVKIDSRRRKRSPGEDYKHGREGEDYRHGREERGHRRQDTESDDYPRRRHHGERR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4015g00004 482 Gene3D - 4 66 IPR029000 -
Gabi4015g00004 482 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 4 387 IPR035542 -
Gabi4015g00004 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Gabi4015g00004 482 SUPERFAMILY RNA-binding domain, RBD 122 233 IPR035979 GO:0003676
Gabi4015g00004 482 Coils Coil 370 390 - -
Gabi4015g00004 482 FunFam Peptidyl-prolyl cis-trans isomerase 75 216 - -
Gabi4015g00004 482 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 52 IPR002130 GO:0000413|GO:0003755
Gabi4015g00004 482 SUPERFAMILY Cyclophilin-like 7 65 IPR029000 -
Gabi4015g00004 482 Gene3D - 122 249 IPR012677 -
Gabi4015g00004 482 MobiDBLite consensus disorder prediction 282 482 - -
Gabi4015g00004 482 ProSiteProfiles Zinc finger CCHC-type profile. 234 247 IPR001878 GO:0003676|GO:0008270
Gabi4015g00004 482 SMART rrm1_1 137 210 IPR000504 GO:0003723
Gabi4015g00004 482 CDD RRM_PPIL4 133 215 - -
Gabi4015g00004 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4015g00004 Gabi-Chr4015 8932 27457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4015g00004 149 225 Eukaryotic Initiation Factors Gene Family AT1G22760 35.065 1.11e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4015g00004 K12735 - gmx:100776900 710.294