Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4015g00003 ATGTCGGTGTTGATCGTGACGAGCTTAGGGGACATGGTGGTCGATTTGCACACCCAAAAGTGCCCCTTGACCTGCAAGAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCTCAGACTGGCGATCCCACTGGAAGTGGGAGTGGTGGTGATTCCATCTACAAGTTTCTTTATGGTGAACAAGCTCGGTTTTTCAGCGATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACGGTTGCGATGGCAAGTGCAGGAGAGAATCTGAATGCTTCACAGTTTTATATCAGTCTGCGTGATGACCTTGATTACCTAGACGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATAAATGAAGCTTATGTGGATGTGAAAAGCAGACCATATAAAAATATCCGAATCAAGCACACATACATTCTGGAGGATCCTTTTGATGATCCTCCTCAACTAGCTGAGTTCATTCCTGAAGCTTCACCAGAAGGAAAACCCAAAGATGAGGTTGATGATGACGTGCGACTTGAAGATGATTGGGTGCCAATGGATGAACAATTGGACCCAACAGAGCTTGAAGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGATATTAAGCCTCCAGACAATGTACTATTTGTCTGTAAATTGAACCCTGTTACTGAGGATGATGACTTGCATACAATATTTTCACGCTTTGGGACTGTATCCTCGGCTGAAATCATCCGTGATCAAAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACAGGCGTGTGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTCTGGTCACAATACAGGCGAAAAGATCAAAGGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTATAGATCATATTGCCAAGAATTGCAATGGAGATGCTACAATGAAACAACCTGCAAAATACATCTTGAAGGATGATAATGCCCAACATGGTGGAGATAATGCAAGATACGAAATGGTTTTTGATGGAGACAAGACAGAAAGTTCAAGGCCAGATGTAAAATACCATAGTCATGACAGGGATGATCTAGTTGAGAAAAAGGATAGGAAGGAAAATTTTAAAGATCATAGAGGTCGTAGGGATCAGGAGATGGTAGGCTCAAACAGCAGAGATAGGTATGGTGATAGAAGCAGAGGGAATGGGAGAAATGGAGATGATAAAGCGCGATCTGAAAGAGATACAAGAGATTTGGAAGCTGACAAGAAAGACCGAGAGAAGTATATGGGAAGACAGAGAGAGGATGACAACAGACGGAAAGACGAGCTAGACTCGAGAAAAAGAGACTTAGATGATAGATACATAGAAAGACAGGGTAGTCGAGATTGTAGAAGAAAAACAGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGATCTGAAGACAGTGGAAGGCAAGATGTGAAGATTGATTCCAGAAGAAGAAAAAGAAGCCCGGGTGAAGATTACAAACATGGAAGGGAGGGTGAAGATTACAGACATGGAAGGGAAGAACGTGGACATAGAAGACAAGATACTGAATCTGATGACTACCCTCGTAGGAGGCATCATGGTGAAAGGAGATGA 1770 0.4158 MSVLIVTSLGDMVVDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGSGSGGDSIYKFLYGEQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYISLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDVKSRPYKNIRIKHTYILEDPFDDPPQLAEFIPEASPEGKPKDEVDDDVRLEDDWVPMDEQLDPTELEEVIRSKEAHSRAVVLESIGDIPDADIKPPDNVLFVCKLNPVTEDDDLHTIFSRFGTVSSAEIIRDQKTGDSLCYAFIEFEDKQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQRGKGGGCFKCGSIDHIAKNCNGDATMKQPAKYILKDDNAQHGGDNARYEMVFDGDKTESSRPDVKYHSHDRDDLVEKKDRKENFKDHRGRRDQEMVGSNSRDRYGDRSRGNGRNGDDKARSERDTRDLEADKKDREKYMGRQREDDNRRKDELDSRKRDLDDRYIERQGSRDCRRKTDSSHLERRNDRDYRKRSEDSGRQDVKIDSRRRKRSPGEDYKHGREGEDYRHGREERGHRRQDTESDDYPRRRHHGERR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4015g00003 589 SUPERFAMILY RNA-binding domain, RBD 229 340 IPR035979 GO:0003676
Gabi4015g00003 589 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Gabi4015g00003 589 SMART rrm1_1 244 317 IPR000504 GO:0003723
Gabi4015g00003 589 FunFam Peptidyl-prolyl cis-trans isomerase 182 323 - -
Gabi4015g00003 589 Gene3D - 229 356 IPR012677 -
Gabi4015g00003 589 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Gabi4015g00003 589 CDD cyclophilin_RRM 4 169 IPR035538 -
Gabi4015g00003 589 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 Coils Coil 477 497 - -
Gabi4015g00003 589 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Gabi4015g00003 589 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 583 IPR035542 -
Gabi4015g00003 589 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Gabi4015g00003 589 Gene3D - 1 172 IPR029000 -
Gabi4015g00003 589 CDD RRM_PPIL4 240 322 - -
Gabi4015g00003 589 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Gabi4015g00003 589 MobiDBLite consensus disorder prediction 389 589 - -
Gabi4015g00003 589 FunFam Peptidyl-prolyl cis-trans isomerase 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4015g00003 Gabi-Chr4015 8929 28260 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4015g00003 7 166 U-box Gene Family AT5G67530 39.375 3.62e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4015g00003 K12735 - gmx:100776900 918.302