Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4014g00001 ATGGCGGTTCTTGGCTCATATTTGATGGTCTTTCTCTCTTCTTCGTCTGGATCTTTGGTTTTCGGAGGCCCATGGCAAAGTGCTCATGCCACTTTCTATGGTGGCAGCGATGCCTCCGGAACAATGGGTGGTGCTTGTGGGTATGGAAACTTGTATAGCCAAGGCTATGGTGTGAACACTGCAGCACTGAGCACAGCACTGTTCAACAATGGCTTGAGCTGCGGTTCATGCTTTGAGATCAAGTGTGACCAAGATCCTCGTTGGTGCAACCCTGGGAACCCTTCAATCTTGATCACTGCAACCAATTTTTGCCCACCAAACTTTGCTCTTCCTAGTGACAATGGTGGTTGGTGCAACCCACCTCGACCACACTTTGACCTTGCCATGCCAATGTTTCTCAAGATCGCTCAGTACCGTGCCGGAATTGTCCCCGTCGCTTACCGCCGGATACCATGCAGAAAGGTAGGAGGCATCAGATTCACAATCAACGGCTTTCGTTACTTCAACCTGGTGCTGATCACCAACGTCGCGGGTGCAGGAGATATCGTGCGCGTGAGTGTGAAAGGAACCAACACTGCGTGGATGAGCATGAGCCGCAACTGGGGGCAAAATTGGCAATCCAATGCCATTTTGGTGGGCCAGGCCCTCTCCTTTAGAATCACCGGCAGTGACCGACGTACCTCAACCTCATGGAACGTGGCATCACCTAATTGGCAGTTCGGACAAACCTTCATGGGAAAGAATTTCCGTGTCTAA 756 0.5119 MAVLGSYLMVFLSSSSGSLVFGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFEIKCDQDPRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVAYRRIPCRKVGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTNTAWMSMSRNWGQNWQSNAILVGQALSFRITGSDRRTSTSWNVASPNWQFGQTFMGKNFRV 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4014g00001 251 CDD DPBB_EXPA_N 24 152 - -
Gabi4014g00001 251 PANTHER EXPANSIN-A15 22 249 IPR002963 GO:0009664
Gabi4014g00001 251 SUPERFAMILY PHL pollen allergen 156 245 IPR036749 -
Gabi4014g00001 251 Pfam Lytic transglycolase 60 147 IPR009009 -
Gabi4014g00001 251 Gene3D - 12 153 IPR036908 -
Gabi4014g00001 251 SMART dpbb_1 60 147 IPR007112 -
Gabi4014g00001 251 FunFam Expansin 157 249 - -
Gabi4014g00001 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Gabi4014g00001 251 FunFam Expansin 15 153 - -
Gabi4014g00001 251 Gene3D - 157 249 IPR036749 -
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Gabi4014g00001 251 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 96 106 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 232 248 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 156 168 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 168 189 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 115 132 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 203 224 IPR002963 GO:0009664
Gabi4014g00001 251 PRINTS Expansin signature 132 145 IPR002963 GO:0009664
Gabi4014g00001 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 157 IPR007112 -
Gabi4014g00001 251 SUPERFAMILY Barwin-like endoglucanases 24 175 IPR036908 -
Gabi4014g00001 251 Pfam Expansin C-terminal domain 158 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4014g00001 Gabi-Chr4014 58488 68566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4014g00001 22 251 Expansin Gene Family AT2G39700 86.087 2.76e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4014g00001 - - gmx:547955 482.256