Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi400g00006 ATGCAATCAGATAATGGCAAATTATTTATTGGTGGAATATCATGGGATACAAATGAAGAGCGGCTCAAGGAGTATTTTAATAATTATGGGGAGGTCATGGAATCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCCGGGGATTCGGTTTCATTGTTTTTTCTGACCCAGCTGTTGCTGAAAGAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTCCCTAGAGATGACCAGAACATACTGAGCAGAAACAGTGGCAGTGTACATGGTTCTCCAGGTCCATGCCGCACAAAAAAGATATTTGTTGGAGGTTTAGCATCAACAGTAACAGGGAGTGATTTCAAAGAGTACTTTGATCAGTTTGGGAATATAACAGATGTTGTAGTGATGTATGATCAAAACACTCAGAGACCAAGAGGGTTTGGATTTATCACTTATGATTCTGAGGAAGCTGTTGACAAAGTCTTACTCAATACTTTTCATGAATTGAATGGTAAGATTGTAGAGGTCAAGCGGGCAGTTCCTAAGGAGCTATCTACAGGACCAAACCACAGCCCACTTGGAGGATATAACTATGATCTTAGTAGGGTTAGTAGCTTCTTAAATGGCTTCACTCAGGGATATACTCCAAGTAATGTTGGAGGGTATGGCCTTCAGGTGGATGGTAGATTCAGTCCTGTTTCTAGTGGTCGAAGTGGATTTGCTCCATTTGGTTCTGGTTATGGAATGGGTATGAATTTTGAGTCTGGTTTGAACCCTGAATTTGGGGCAAATGCGAATTTCAATAGTAATCTTAGCTATGGTCGAGGATTAAACTTAAATCCTTATTATATTGTCAGTTCAAATAGGTCTAGTAGTCCTATCGGGTACGATGGTGGCAATGGTGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAAGCTCTGCTAGTTCCAGCGCATACATTGGATCAGGGAGTGGGAGAGTTGGAGGAAACACATTTGGCAATACTGGAGTCAACTGGGGTTCTTCATCAATTTCTGTTCTAGGGGGAGGGAACAATGTATCACAAAGTAGTGGCAACCTTGGCTTTGGAGGTGCAGGCAACAATTATGGTTTGGGGACTGGAGGGTACGCAAGAAGCAGGGGTACCAATATACCCCCAATGTCGTCGTACTCTGTGTCAAATGGTGGTTACGATGGGGCTTTTTCTGACTTTTACAATAGTAGTTCAGTTTATGGTGACCCCACTTGGCAATCTTCAAATTCTGGGCGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGCGGTGCAGCTTCAGATGTTTCTACCGAAAGTTCTCCAGGTTATGTTGGAGGCTATACAGTTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1443 0.429 MQSDNGKLFIGGISWDTNEERLKEYFNNYGEVMESVIMKDRTTGRARGFGFIVFSDPAVAERVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSVHGSPGPCRTKKIFVGGLASTVTGSDFKEYFDQFGNITDVVVMYDQNTQRPRGFGFITYDSEEAVDKVLLNTFHELNGKIVEVKRAVPKELSTGPNHSPLGGYNYDLSRVSSFLNGFTQGYTPSNVGGYGLQVDGRFSPVSSGRSGFAPFGSGYGMGMNFESGLNPEFGANANFNSNLSYGRGLNLNPYYIVSSNRSSSPIGYDGGNGGNNSFFSSVTRNLWGNGGLSYGTSSASSSAYIGSGSGRVGGNTFGNTGVNWGSSSISVLGGGNNVSQSSGNLGFGGAGNNYGLGTGGYARSRGTNIPPMSSYSVSNGGYDGAFSDFYNSSSVYGDPTWQSSNSGRDGSGPFGYGLGGAASDVSTESSPGYVGGYTVNKRQPNRGIAT 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi400g00006 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gabi400g00006 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Gabi400g00006 480 MobiDBLite consensus disorder prediction 445 480 - -
Gabi400g00006 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gabi400g00006 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 476 - -
Gabi400g00006 480 SUPERFAMILY RNA-binding domain, RBD 105 201 IPR035979 GO:0003676
Gabi400g00006 480 Gene3D - 4 88 IPR012677 -
Gabi400g00006 480 CDD RRM2_Hrp1p 107 184 - -
Gabi400g00006 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Gabi400g00006 480 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Gabi400g00006 480 Gene3D - 103 190 IPR012677 -
Gabi400g00006 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Gabi400g00006 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Gabi400g00006 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gabi400g00006 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gabi400g00006 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi400g00006 Gabi-Chr400 139337 148703 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi400g00006 8 234 Eukaryotic Initiation Factors Gene Family AT1G71770 27.509 2.38e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi400g00006 K14411 - gmx:100795907 773.467