Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi400g00002 ATGGCATTCATCGACGACGGCATCGACCTTGACCCGTCGGATTTCGGGTCATCGGTTCCTCTGAAGAAGGTCCCAAACGGCGACGTATTCGAGGCGTCACGTGCGGGCGACGTTGAGCGTCTCCGGTACCTGCTGGAGTCAGGCGTGAACGTGAATGCGCGAGACCAGTGGGACTCCGTCGCACTCTACTACGCCTGCCTCGCCGGCCACCTCGACGCCGCCCGCATGCTCCTGGAGAGCGGCGCCATATGCTCCGAACACACCTTCGACGGCGACCGGTGCCACTACGCCGCACTGAATTTGAAGGTCCGAAAACTCCTAAAGGCGTTCGAGGCCCGTCCACCGCCATTGGGCCCATTACAGGCCTCTTTAAGGGACACTTTCTTGGCCTCCGAAGCTAACCGCTCTTACTACCTCCTCGCTGATCCTTACTTTCAAATTCCCGGTATTTCATCCACTCAGGGGTTCAGTTGCAGCAACTTTCCTACAGATGTGGTTTTTATTGTACAAGGAAGACCTATTGAAGCTCACAGAGTCATTTTAAGTGCAAGGTCACCATTTTTCAAGAAAAAATTTGAGACTGATTGGAAAGAGCGCAGCGAAGTAAGATTCTCGAGGGAAAAGTTGTCATATCCTGCACTTTATAGTCTCATACACTTCTTTTATTCAGACAGATTGGAGATTGCCGTGGATGACATGGAAGATCTTGTGAGAATCTGCAAAGTGTGCAAATGCGAATCACTACAGAAAGTTCTTGAGAAAGAAGTGATTCATCAAAAATATGCAGAGTATAAAGCATTGGGAGATGTAGATAATTCTCAAAAGCGGTATATTTTACAGGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCATCGAATCCTTCTGACTGCCCTTTCAAATTCCACTTTTGAAAATGGTCAAGATGATGGAATTGATAAATTGGTATCTAGGATGGGTGCCATGCAGATGACTAAATCTCTTGACGATCTTGCTGATGTTTGTGCAAGAGTTGATAGAAAAATTTTCCGCTGCCATAAAGTTATTCTAGCCTCAAGGTCAGAATATTTTAAAGCAAGATTGTCACGTATGAAGGACTTCCATGAAGGGAAAGATGAGTTGTCTGTTGACTTGCTTCCTTGCCTTGAAGAACATGACTTGAGCATGGCAGCATTTGAGAAAATGATTGAATATATGTACACGGATGGTTTGCAGGATATAAATCCAGATCAGGCTGAGGAAATGTTTGATGTTGCTTCTAGATACTTATTGTTTCCTCTTAAGCGTGCGGTGGCTGATGTGTTGTTGCCACACTTAGAAATGGTGTCACCTGAAGAACTTTGCCATTGGTTAATTCTAGCAGACATAGCTCTTGATCTGGGGGCCACTCTTGCTTTTGCAGTCATCACCTTGATTGCGAAACCCTATTCTGATGATCTTCGGTCACCTTGCTCCATTGGAAAAAAAAAATTGGGACCTTTTGGACCGAGAGGTATGGTGTTGTCAAGATTCGGGAATATTGTCTAG 1536 0.4609 MAFIDDGIDLDPSDFGSSVPLKKVPNGDVFEASRAGDVERLRYLLESGVNVNARDQWDSVALYYACLAGHLDAARMLLESGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLGPLQASLRDTFLASEANRSYYLLADPYFQIPGISSTQGFSCSNFPTDVVFIVQGRPIEAHRVILSARSPFFKKKFETDWKERSEVRFSREKLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKVLEKEVIHQKYAEYKALGDVDNSQKRYILQGLSLPEEDRLPAALHRILLTALSNSTFENGQDDGIDKLVSRMGAMQMTKSLDDLADVCARVDRKIFRCHKVILASRSEYFKARLSRMKDFHEGKDELSVDLLPCLEEHDLSMAAFEKMIEYMYTDGLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSPEELCHWLILADIALDLGATLAFAVITLIAKPYSDDLRSPCSIGKKKLGPFGPRGMVLSRFGNIV 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi400g00002 511 SMART BTB_4 163 260 IPR000210 GO:0005515
Gabi400g00002 511 SMART BTB_4 335 442 IPR000210 GO:0005515
Gabi400g00002 511 ProSiteProfiles BTB domain profile. 163 230 IPR000210 GO:0005515
Gabi400g00002 511 FunFam BTB/POZ domain-containing protein 23 144 - -
Gabi400g00002 511 CDD BTB_POZ_ZBTB_KLHL-like 334 425 - -
Gabi400g00002 511 Gene3D Potassium Channel Kv1.1; Chain A 318 461 IPR011333 -
Gabi400g00002 511 ProSiteProfiles Ankyrin repeat profile. 32 56 IPR002110 GO:0005515
Gabi400g00002 511 Pfam Ankyrin repeats (many copies) 31 78 IPR002110 GO:0005515
Gabi400g00002 511 ProSiteProfiles BTB domain profile. 335 411 IPR000210 GO:0005515
Gabi400g00002 511 Pfam BTB/POZ domain 331 438 IPR000210 GO:0005515
Gabi400g00002 511 Pfam BTB/POZ domain 159 259 IPR000210 GO:0005515
Gabi400g00002 511 Gene3D - 2 140 IPR036770 -
Gabi400g00002 511 FunFam BTB/POZ domain-containing protein 157 279 - -
Gabi400g00002 511 SUPERFAMILY POZ domain 151 255 IPR011333 -
Gabi400g00002 511 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 7 458 IPR044515 -
Gabi400g00002 511 SUPERFAMILY POZ domain 325 441 IPR011333 -
Gabi400g00002 511 SUPERFAMILY Ankyrin repeat 31 107 IPR036770 -
Gabi400g00002 511 Gene3D Potassium Channel Kv1.1; Chain A 152 275 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi400g00002 Gabi-Chr400 37018 58219 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gabi400g00002 BTB 1.3e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi400g00002 K10520 - qsa:O6P43_020762 754.592