Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4007g00001 ATGCCAGCAATTGCAGCCAAGCGCAGATCAAGATCTCCTGCCCCTTCCCCTCCTGACCGTAAATTGCCCCGCCGATGCACTGCCACAGCTCGAAATAAAATTGGCATCGATGAAAACCAAGCTGAATTGCTGAAACCTGCAGCTTTGAAGCCCCAATGGAATCCCAAAGATGGTGAGCAATTGAGGATGGTGAAGGAGGCATTGCACTTGTCTACTGTACCATCTACAATTTGTTGCCGCGATGAGGAGCAAGATGTGGTTTTGAGGTTCTGCAAGCGGTGCATTGAGCATGAGAAGGCTGGGAGTCTGTATGTATGTGGGTGTCCCGGAACTGGGAAATCATTGTCTATGGAGAGGGTGAAAGAGCTTTTGATGAACTGGGCTACAGAGGCTGGTTTCTCGCTGCCAGATATTTTATCTGTAAATTGTACATCCCTTGCCAATACATCTGATATTTTCACTAAGATACTTGGGTTAAACCAAGGACGGGGAAAAAAGGTTTCAGCCACACCCTTACAACAACTTCAGAACATATATTCTCAGAAATCATCTATCAAGAACATGATATTGATAGTAGCTGATGAATTAGATTACCTAATAACCAAAGACAGAGCTGTGCTCCATGATCTTTTCATGCTTACTACCTTCCCATTTTCCAGATGTATATTAGTAGGTGTAGCAAATGCAATTGACCTAGCTGATCGATTTCTTCCGAGGCTTACATCATTAAATTGCAAGCCTATTGTTGTAACTTTTAGGGCATACTCTAAAGATCAGATCCTTAGGATTCTCGAAGAAAGGCTAAATGAACTTCCTTACACTGTCTTCCGACATCAAGCACTGGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGAGATATGCGGAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACTTCATTGGAAGAGAAGTCATCCTCCCAGCAAAGTCTTGCTACAGCTCCTGATTTTATGAAAAAACAAGAATTTGATATTGTAAGGGTTGATCATATGGCTCTTGCCTTGTCAAAGACATATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTTTGCTCTTTGGTGAAGCAATTCCGTGGAGCCAAGAAAGATGCAATCCTTGGGGAGTTGTATAAGTCTTATATGGAGATATGCAAATCATCACTCATTCCCCCGGCAGGGATCCTAGAGTTTTCAAACATGTGCAGAGTGCTGAGTGGTCAGGGGCTGATTAAACTAGGACAATCCCGAGAGGATAAATTGAAAAGAGTGACACCCAAAGTAGATGAGGGTGATATTACTTTTGCATTGCAGGGAATCCGTTTTTTTCAAAACTGTCTTAAATGTTTCTGCTGA 1425 0.4246 MPAIAAKRRSRSPAPSPPDRKLPRRCTATARNKIGIDENQAELLKPAALKPQWNPKDGEQLRMVKEALHLSTVPSTICCRDEEQDVVLRFCKRCIEHEKAGSLYVCGCPGTGKSLSMERVKELLMNWATEAGFSLPDILSVNCTSLANTSDIFTKILGLNQGRGKKVSATPLQQLQNIYSQKSSIKNMILIVADELDYLITKDRAVLHDLFMLTTFPFSRCILVGVANAIDLADRFLPRLTSLNCKPIVVTFRAYSKDQILRILEERLNELPYTVFRHQALELCARKVAAASGDMRNALCICRSAIEMLEAEIRESACNLNTSLEEKSSSQQSLATAPDFMKKQEFDIVRVDHMALALSKTYRSPVVDTIQSLPHHQQIILCSLVKQFRGAKKDAILGELYKSYMEICKSSLIPPAGILEFSNMCRVLSGQGLIKLGQSREDKLKRVTPKVDEGDITFALQGIRFFQNCLKCFC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4007g00001 474 Coils Coil 306 326 - -
Gabi4007g00001 474 Gene3D - 57 245 IPR027417 -
Gabi4007g00001 474 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 315 IPR027417 -
Gabi4007g00001 474 FunFam Cell division control protein 244 370 - -
Gabi4007g00001 474 Pfam AAA domain 98 215 IPR003593 GO:0016887
Gabi4007g00001 474 SUPERFAMILY "Winged helix" DNA-binding domain 366 469 IPR036390 -
Gabi4007g00001 474 Pfam AAA lid domain 277 311 IPR041083 -
Gabi4007g00001 474 PIRSF Cdc6 4 472 IPR016314 GO:0006270|GO:0051301
Gabi4007g00001 474 FunFam Cell division control protein 58 243 - -
Gabi4007g00001 474 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 14 469 - -
Gabi4007g00001 474 Gene3D - 370 456 IPR036388 -
Gabi4007g00001 474 SMART Cdc6_C_2 381 460 IPR015163 -
Gabi4007g00001 474 Gene3D - 246 369 - -
Gabi4007g00001 474 CDD Cdc6_C 374 456 IPR015163 -
Gabi4007g00001 474 FunFam Cell division control protein 373 463 - -
Gabi4007g00001 474 Pfam CDC6, C terminal winged helix domain 381 459 IPR015163 -
Gabi4007g00001 474 MobiDBLite consensus disorder prediction 1 25 - -
Gabi4007g00001 474 CDD AAA 83 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4007g00001 Gabi-Chr4007 7721 19691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4007g00001 16 470 Core DNA Replication Machinery Family AT2G29680 59.402 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4007g00001 K02213 - gmx:100787371 751.125