Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4005g00005 ATGGCACAAGGAGCACGAGCACAGTCTTCTTCTCCTATTACCTATGAATATGAATATGAATATGATGTATTTCTCAGTTTTCGTGGTGAAGATACCCGCTACGGCTTTACTGGCAATCTTTATAGTGCTCTGAGTCAACGGGGAGTCTTGACCTTCATGGATGATCATGATCTAAAAAAAGGGGAAAAGATTACAACTGCTCTGCTCCGTGCAATTCAAAAGTCCAGGATGACCATCGTTATTTTGTCTAAAAGCTACGCATCCTCAACATTTTGTTTGAACGAACTTGTGGAGATCCTTGAGTGTTATACAGAACAAAACATGTCGATTTGGCCAGTTTTCTATGATGTAGATCCATCAGATGTGCGACATCAAACAGGGAGTTATGGAGAAGCATTCACAAAGCACGAACGGGGAAGATTCAGGGATGACAGCGAGAAGTTGAAAAAATGGAAGTTGGCTTTGAATCAAGTAGCTGATTTCGGTGGTTCCCATTACAACCATGGGGTCTATGAGCATGTGCTCATTAGAGAAATTATAAAAGAGGTCTCCCGTAAGATTAAGCGACCTCTCTTGCATATTGCTGTTTACCCTGTTGGATTGGATGCTCGAATAAAAGGTGTACTGTTGCTTATAGGCGCTGGCTTTAATAAGAAATTCAACATGATCGGTATTCATGGGACTGGTGGAATAGGCAAATCAGCCATTGCACGTGCTGTATATAATTTGATAGCATCTCAATTTGAAGGTTCATGCTTTATTGCTGATGTTAGAGAATTAACGTCTAGACACGGATTAGAAAAGATCCAAGCGACAATGCTTTCTCAACTAATTGGGGGGAGAAATTTCGAGTTAGAAAGTTTGAATCAAGGGATTCCAATATTAAAAGAACGAAAGAAAGTCCTTCTTATTCTTGATGATGTTGACAACATGGATCAATTACAAGCAATTGAGGGAGGACTTGATTGGTTTGCTCCTGGTAGCGTCATCATTATAACAACAAGGCACAAGCATTTGTTAGATAGCCATGATGTTAAAAAATATGAGGTTAAAAATCTGAATCATACTGAAGCTCTTGAATTGTTTAGGTGGAAAGCTTTAAAAAATAGTGAAGCTGGCCTTTACATGGAAATCACAAAGCGTCCAATACCTTACGCCGGTGGCCTTCCTTTGGCTTTGGAAACGATAGGCTCAAACTTGTTTGGTAAAACATTAGATGAATGGAATTATGCATTAGAAGCATATGAAAGAATTCCAATTGAAGAAGATGTTGATAAAATTCTTGAAGTTAGCTATGATGGCTTGGGGGAAAATGAAAAGGAGATTTTTCTTGACATAGCTTGCTTCTTCAAAGGATGCACTCTAAGATATGTTACAAATATGCTACATGCTCGTCTTGGTTTTCCCCCACAAGATGGTATTCGAGTGCTGCAAAAAAAATCCCTCATTAACATTTGGAGATCCAATGGTGAAATTATTGTAACAATGCATAACTTGATTCAACATATGGGAAAAGAAATAGTTAGAAAGCAATCAACTTCCTTTGAAGGACGTAATAGGTTGTGGTTTCATGAGGACGTTGTTTGCATTTTGGAGAAATACAAGGAAAATGATGAAATTAAAGCCATGATGTTGGATATGCCTGAAGATAAACTTCAATTCAAGGAAGATGTGTTCGGAAAGATGAAAAACCTCATGATGCTTATAAAAAAGGAAGTTGGTTTTGCCAGTTGCTTCGAACATCTCCCAAAAAGTTTGAGAGTGTTGGAATGGTGGAGACATCCTGCAGCTTCTTTACCATCTGTTCTTCATAACCTTGTCATACTCAACTTGTCATACAGTCGTTGCTTTCAATGGGACAAATCATTACAGATGTCAGAGGTTTTGAATCAGTTGATCTTCACGGGTTGTAAGTGCTTACAAGAAATACCTGATGTGTCTGGTCTCCCAAATCTGAAAGAATTGTGTGTTGATGATTGCACAAGTTTGATTGAGATTGATGATTCTGTTGGACTTCTTGTTAATCTCCAAAGGTTCAGTGCTAAAGGGTGTACCCAGCTTAAGAAATTTCCGCACAGCATAAAGTGGAAATCTCTGGAATACCTTTGTCTTCAGGACTGCGAGAGTCTTGATAATTTCCCAGAAATAAAAGAACCAATGGAAAAGCTGAAATTCCTTGACTTGGAAGGAACTGCTTTGAAAAATCTGCTACCTTCAGTGAAATTCCTTAAAGGCCTTCGAAGGTTACACCTGAGCAGATGCAAAATGCCTGAAAATAATGTGCTATCCGAAATTGTTCAAAATTTGCCAAATTTCTTTCCCGAATTGAAAACAGTGAGATTAGGAGACTCAAATTTGACAATCCTTCCTGCATGCATTAATGAATGTCAAAATTTGAAAAGGCTAGACTTGTCTAATTCCAAGCAGCTTGGAGAAATTGGAGGGCTTCCACCAAACATAGTTGAATTTGTGGCAAATAACTGCACGTTACTGAAAGATGATTGTTCAACTTTAAACAAGTTGATAAAGAGTCAGGTAATTCATTCTAGAATACAATTCTATGTTCTGCCAGGGCAAACGATCCCAGAATGGTTTGACCACACTAGCAAGGGACACTCTCTATGTTTCTGGTTTCGTAAGGAATTCCCTTGCCTCACTGTGTCTGCTGTTTTAGGAGTTGTAGATAATACTGAGCATCCTTTCGATGTGCACTTTAAGTTCTGTTTTAAGATCAATGATATTGACATGCCTTTGTTTAATTATAAGAACAATTTAGAGGGTGATCACATAGTTATATTTAACTATATTACTAATCCAATGGATTTGGATCATGGAGGACTACTTTCAGAGAATGAGTGGAATTATGGGGAGGTTTTATTTGTGATAAAACCCGATTCACCCGATTCTGGTAGTTCAGGATCAATCCAACGGATCGGAGTTCTTGTGAACCAGACATTTATCAGTAAAGGGCATGTTAGATTCACAAATCCTTATCCTTCCAAAATTACATGTGATGACAAGGGAAACCAGCTTAGGTTGTGTAAGGCAGATGATAAACAACAGCAGCAACAACAATTAGCTTCTTTCAACCGCTCAATCCCAATGAGCTATGAAATGGGGGAACAACCTTTGAGTTATGAGTTGTGCAATTCAGATTCACTGGAACCAGCGTGGCCAATTGACGGCTCCAACAACACAGATGGAGCATTCCTTGATCATCAAGCAAAAGATGCAGGAGAATCATCTCAAGTGCAAAGATCCACTTCAACAAGTGGCCAAGTTGGACCAAAACTGCCCCTAGGAACCAGTTTGACTATGTTGCCAAAAACAATTGATGCGTCTTTAACAAATCAAACTGAACTAACTCTAGTTGATGATGTAGAAATGGAAGCATTTTATGTTTCTCTTGATGCTGAGACCCGGGTTGTTTCAAGTGAAGAGGCCAGCAAAGCTAGGAGAATAGTACACGACTTCATCTCCAATAATGATGCTTCTATTATGTTGCATCCTGAACGGTGCAGCGTCATGAAAACCAGTTTAGAGAACCTCTCCAATTTGTCTGCAGACCATGGTATATCAAGAGAAATGAGAACACTGTTATCAGAAGCTTCAAGGGAGTACACGCATTTTAGGAGGGACTACATTGAAGCAAGTATGAAAATTGCGTCCACATCATTCGATTTGCAGAGAGCTGATGAATTAGAAATAGGTCTTGAACTTAACAAGAAAAGGTTCTGTGAAGAGTTGGCCTCAGAACATGAGCTGATTAAAAAGTTAGCCAGAATGGAGGAAAGCAAAAGGAAGCTAGAAGAGAAAATCAATGTCATTAAAGCTAACATCTCCGCTTCTCAATCAGAAAAGGAGAACATTCTTAACAGAAAGAGAGATATCTTCAAAGAAGGAAAGGCACTTCAAACTCAAAGAGATGAGTTGAGGGAAAAAGCACCTAGTTTGAAATACGAGCATGGTTTTGCCAAGGAAACACAATCAAGAATGAATTCTGAATGGTCTGAACTCAGAGAAAAACTTAAGAAGATTGCTGAAGAGTGA 4050 0.3879 MAQGARAQSSSPITYEYEYEYDVFLSFRGEDTRYGFTGNLYSALSQRGVLTFMDDHDLKKGEKITTALLRAIQKSRMTIVILSKSYASSTFCLNELVEILECYTEQNMSIWPVFYDVDPSDVRHQTGSYGEAFTKHERGRFRDDSEKLKKWKLALNQVADFGGSHYNHGVYEHVLIREIIKEVSRKIKRPLLHIAVYPVGLDARIKGVLLLIGAGFNKKFNMIGIHGTGGIGKSAIARAVYNLIASQFEGSCFIADVRELTSRHGLEKIQATMLSQLIGGRNFELESLNQGIPILKERKKVLLILDDVDNMDQLQAIEGGLDWFAPGSVIIITTRHKHLLDSHDVKKYEVKNLNHTEALELFRWKALKNSEAGLYMEITKRPIPYAGGLPLALETIGSNLFGKTLDEWNYALEAYERIPIEEDVDKILEVSYDGLGENEKEIFLDIACFFKGCTLRYVTNMLHARLGFPPQDGIRVLQKKSLINIWRSNGEIIVTMHNLIQHMGKEIVRKQSTSFEGRNRLWFHEDVVCILEKYKENDEIKAMMLDMPEDKLQFKEDVFGKMKNLMMLIKKEVGFASCFEHLPKSLRVLEWWRHPAASLPSVLHNLVILNLSYSRCFQWDKSLQMSEVLNQLIFTGCKCLQEIPDVSGLPNLKELCVDDCTSLIEIDDSVGLLVNLQRFSAKGCTQLKKFPHSIKWKSLEYLCLQDCESLDNFPEIKEPMEKLKFLDLEGTALKNLLPSVKFLKGLRRLHLSRCKMPENNVLSEIVQNLPNFFPELKTVRLGDSNLTILPACINECQNLKRLDLSNSKQLGEIGGLPPNIVEFVANNCTLLKDDCSTLNKLIKSQVIHSRIQFYVLPGQTIPEWFDHTSKGHSLCFWFRKEFPCLTVSAVLGVVDNTEHPFDVHFKFCFKINDIDMPLFNYKNNLEGDHIVIFNYITNPMDLDHGGLLSENEWNYGEVLFVIKPDSPDSGSSGSIQRIGVLVNQTFISKGHVRFTNPYPSKITCDDKGNQLRLCKADDKQQQQQQLASFNRSIPMSYEMGEQPLSYELCNSDSLEPAWPIDGSNNTDGAFLDHQAKDAGESSQVQRSTSTSGQVGPKLPLGTSLTMLPKTIDASLTNQTELTLVDDVEMEAFYVSLDAETRVVSSEEASKARRIVHDFISNNDASIMLHPERCSVMKTSLENLSNLSADHGISREMRTLLSEASREYTHFRRDYIEASMKIASTSFDLQRADELEIGLELNKKRFCEELASEHELIKKLARMEESKRKLEEKINVIKANISASQSEKENILNRKRDIFKEGKALQTQRDELREKAPSLKYEHGFAKETQSRMNSEWSELREKLKKIAEE 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4005g00005 1349 SUPERFAMILY "Winged helix" DNA-binding domain 423 531 IPR036390 -
Gabi4005g00005 1349 Gene3D - 352 436 IPR042197 -
Gabi4005g00005 1349 Gene3D - 18 192 IPR035897 -
Gabi4005g00005 1349 MobiDBLite consensus disorder prediction 1076 1100 - -
Gabi4005g00005 1349 Pfam TIR domain 21 187 IPR000157 GO:0007165
Gabi4005g00005 1349 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 774 IPR044974 GO:0006952
Gabi4005g00005 1349 MobiDBLite consensus disorder prediction 1078 1098 - -
Gabi4005g00005 1349 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 446 IPR027417 -
Gabi4005g00005 1349 Gene3D Ribonuclease Inhibitor 713 869 IPR032675 -
Gabi4005g00005 1349 Gene3D Ribonuclease Inhibitor 544 712 IPR032675 -
Gabi4005g00005 1349 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 189 - -
Gabi4005g00005 1349 PRINTS Disease resistance protein signature 386 400 - -
Gabi4005g00005 1349 PRINTS Disease resistance protein signature 794 810 - -
Gabi4005g00005 1349 PRINTS Disease resistance protein signature 295 309 - -
Gabi4005g00005 1349 PRINTS Disease resistance protein signature 222 237 - -
Gabi4005g00005 1349 Pfam NB-ARC domain 221 430 IPR002182 GO:0043531
Gabi4005g00005 1349 SMART till_3 20 161 IPR000157 GO:0007165
Gabi4005g00005 1349 Coils Coil 1252 1286 - -
Gabi4005g00005 1349 Gene3D - 194 350 IPR027417 -
Gabi4005g00005 1349 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 161 IPR035897 -
Gabi4005g00005 1349 ProSiteProfiles TIR domain profile. 19 187 IPR000157 GO:0007165
Gabi4005g00005 1349 SUPERFAMILY L domain-like 547 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4005g00005 Gabi-Chr4005 43508 48495 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4005g00005 20 825 WRKY Transcription Factor Family AT4G12020 29.524 1.55e-64 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4005g00005 - - var:108344061 1407.12