Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4005g00001 ATGCACGTCTGCGAGTCTCTTCCTCTCCTTCTCCCTCTTCCTCTTATCAATCTCCAAAGCTTCTTCTTCCCTCTTCCTCTCTTTGTTATTGGCGTCATTTTGGAGGACCCATCTGTTACAGATGATATGGCCACTAATCAAGCCACTTCAGCGGATGAGGATTTAATAAATTATATTGACTTCCGTGAAGATTGCATGCCAAATGAATTATGTAATAAAGTGGAATATGATGAAATGAGAGATGACAATATTGATGAAATGGAAGATGATATAGCTAATGACTTGCTTGATAATGAGTCGAATGTCATTCCATTATCACTGACAAAGAGTACTAATGTTATGATTGAGGTTGGAATGAAATTTTCGGAACGAAAGGATGTAGTAGACTTGTATTCAACATTTGGTAGGGCAAGAGGTTTTGGAATCCGGACTAGAACATCCAAGGAGAACTATGTGATGCTAACATGTGTTAGAGGGGGTTATCATCAATCGAAAAAGGGAAAAGATGTGGGTGGAATGTCTGAAACCAAACCAAGGCGGACATCATCATCACGTATAGGGTGTGAAGCTTGTCTCAAGGCTTCTAGAGATAAAAAAACAAACGCGTGGAGAATTACATATTTCACTGACAAACATAACCATGAGATGGTTACTCTAAAAAGTGTTTCATATTTGAGATCATATAGAAAAATGCCTGAGGCAACAAAATGTTTGATAGAAAAATTCAATGACGCGGGTTTGCCCACTGGAAAGGTGGCCACCATCTTCAAATCCCATGATTTAGGGATTGATAGTCAAGATTGTTATAATCATATGAAAAATGTGAGGAGAAGGATATTCGACGTCGGGGATGCACAGGCTGTGCTACTTTATTGTATTAAACAACAGTCATTGAATCCTGAATTTTTTTATTCTATTATGTGTGATGAGGATGATCGGATGGTTAGCTTTTTTTGGATTGATGCAAGATCCAGGCACGCCTATGAGCTTTTTGGGGATGTCATCACATTTGACACGACATATAGGACTAATAAGTATTCGATGCCATTTGGACCCTTTGTCGGTGTAAATAATCATTTACAATCCATTTTGTTCGGATGTGCTTTATTGCAAGATGAAACTGAGGATACTTTTATATGGCTATTTGAAGAATGGCTTCGAGCAATGAATGGGAAACATCTGATCGCCATAATTACTGACCAGGACTTGTCAATTAGCAATGCAGTCTCCAAAATTTTTCCAAATGCCAAACATCGATATTGTATATGGCATATCATGAAAAAATTTCCAGAGAAGTTGTCTCATGTCTACCATGAGAACGCGTCATTTAAGAAGCATTTCAATGAGTGTATTTGGAGGTCCAAGAGCACTCAAGAGTTTGAAGACAGGTGGAAACATCTTCTTGTTGAATATGGTCTTGATGAAAATGAGTGGTTGCGTGGACTTTATTCTATTAGATCATCTTGGGTACCAATATTTAATAGTTCGACTTTCTTTGCTGGTATGAATACTACTCAGCGCAACGAAAGTATAAATTCATTCTTTGATAGTTTTGTTATATCTAGCACAACATTAAAGGAATTTGTGGAGAAATACAACCAAGCAGTAGATGTTCTCTACGAATCATTCAAAAAAGAAGACTTTGAATCTAAGCACAAAGAAAGGCTTTTGGCATTTCATATGCCATTGGAGGAGCATGCAACTAAAGTGTATACCCGTGCAATATTTTTGAAATTTAGTAGTGAGCTTTCTCTTAGTTTACAGTTCTCTAAGGAGAAATTTGACAATGGTGGTGAATGGGTTACATATACAGTTTTTAATAGGAAAGACAAAGAAGATTCTGCAATAGTTGAGATGAAATTGGAAAGTATAGAAGCCAGGTGTTCTTGTCATTATTTTGAATTCATGGGAATTCTATGTCGGCATATTCTTGCTACATTTTTGATTGAAAATGTTGAGCAGATCCCTGAACACTTCATCTTGCGTCGCTGGAGCAAGGAAGGAAATGTTATACAAAGTACAAACATGGACATATGTACGACTGATGGAGATAAACTACTTCGGAGCTTTCTCCTACGCTCTAGATATTCCAAGCTTGATGAGCTTGTATAA 2112 0.3731 MHVCESLPLLLPLPLINLQSFFFPLPLFVIGVILEDPSVTDDMATNQATSADEDLINYIDFREDCMPNELCNKVEYDEMRDDNIDEMEDDIANDLLDNESNVIPLSLTKSTNVMIEVGMKFSERKDVVDLYSTFGRARGFGIRTRTSKENYVMLTCVRGGYHQSKKGKDVGGMSETKPRRTSSSRIGCEACLKASRDKKTNAWRITYFTDKHNHEMVTLKSVSYLRSYRKMPEATKCLIEKFNDAGLPTGKVATIFKSHDLGIDSQDCYNHMKNVRRRIFDVGDAQAVLLYCIKQQSLNPEFFYSIMCDEDDRMVSFFWIDARSRHAYELFGDVITFDTTYRTNKYSMPFGPFVGVNNHLQSILFGCALLQDETEDTFIWLFEEWLRAMNGKHLIAIITDQDLSISNAVSKIFPNAKHRYCIWHIMKKFPEKLSHVYHENASFKKHFNECIWRSKSTQEFEDRWKHLLVEYGLDENEWLRGLYSIRSSWVPIFNSSTFFAGMNTTQRNESINSFFDSFVISSTTLKEFVEKYNQAVDVLYESFKKEDFESKHKERLLAFHMPLEEHATKVYTRAIFLKFSSELSLSLQFSKEKFDNGGEWVTYTVFNRKDKEDSAIVEMKLESIEARCSCHYFEFMGILCRHILATFLIENVEQIPEHFILRRWSKEGNVIQSTNMDICTTDGDKLLRSFLLRSRYSKLDELV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4005g00001 703 Pfam SWIM zinc finger 625 648 IPR007527 GO:0008270
Gabi4005g00001 703 ProSiteProfiles Zinc finger SWIM-type profile. 603 651 IPR007527 GO:0008270
Gabi4005g00001 703 Pfam MULE transposase domain 334 428 IPR018289 -
Gabi4005g00001 703 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 113 669 IPR031052 GO:0006355
Gabi4005g00001 703 SMART 26again6 626 653 IPR006564 GO:0008270
Gabi4005g00001 703 Pfam FAR1 DNA-binding domain 130 217 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4005g00001 Gabi-Chr4005 5876 8785 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi4005g00001 MULE 8.8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4005g00001 - - vvo:131633311 634.024