Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00067 ATGATGGCGGCGGCGGCGGCGGCAGCAGGGAGCGTGAATAGTGGGGTGGCACCGTTCCTGAGCAAGACGTATGATATGGTGGATGACTCGTGTACCGATTCGATGGTGTCGTGGGGGAATAACAACAACACCTTCGTTGTTTGGAATGTCACCGAATTCGCCAAACACATCTTGCCTAAGTATTTCAAGCACAATAACTTCTCCAGCTTCGTCAGGCAATTGAATACTTACGGCTTTAGAAAGGTTGACCCAGACCGCTGGGAATTTGCAAATGAAGGTTTTTTAAGGGGTCAAAAACAATTGTTGAAGAGTATCAATAGGCGAAAATCTGCTCATGTAAATGGTATTAGTCAACAACCATCTCAGGTGCAGAACTCACCTGTTGGGGCATGTGTGGAAGTTGGTAAGTTTGGGATTGAGGAAGACATTGAAAGACTGAAAAGGGACAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAACAAACGACTGATAACCAATTGCAAACTGTTGGGCAACGTGTGCAGGTAATGGAGCAGCGTCAGCAACAGATGATGTCATTTCTAGCGAAGGCCATGCATAGTCCGGGCTTCTTGTCTCAGTTTGTACAGCAGCAGAATGAAAGTAATAGACACATAACTGGAGGCAATAAAAAGAGGAGGCTCCACAGGCCGGAAGAAGATAATTTAGCAACCAATCATCTCCATAATGCTCTTGATGGACGTCTTGTCAAGTACCAACCTTCTATAAATGAGGCAGCAAAAGCATTATTTTGCCAGATATTGCAAATGAACAATTCTACAAGGATGGAATCATCAATTAAGAACTCTGATTCATTCATTATTGATGAAGTTCTGTCAGCCGTTCCATTGGATAGTAGTAGTTCATCCACTCAAGTTTCTGGTGTAACCCTTTCTGAGGTTCCACCTATTTCCAGACAGTCATATATGGCAGCAGAATCTCAGTTTCCTGGCAGTTGTATGACCAATAGCATATCTGAGGTGCAATCTTCACCTGCTGTGTTGACTGACTGTGTCGAAGGAGCTGAATTTCCAGAACTAACAGTGCATACTTGTGACGACAATGTTTTAGATTTTGGTGAAGTCCAAGGGATGGGGGCAGAAAGCAGCTTCATGAATCCTGATCTAAAGTTTGTAGGGTCTGACACTGTGAATGATGAGGAGATAGATGTGATGTCAACTGTTTTAGATGGGTCACAATCTGTAGAAGCTGATGTTTTTTCTACTGATGCAGATGGTATTTCTAAGCTTCCAGGAATCAATGATGAATTCTGGGAACTGTTTTTGAGGCCAAGCCCACTTACTGGAGATACAGATGAAGTTAAATGTAGCTCTCTGGTATGTGGTTTGACCGAAGACCTAGAAATGTCATCAGAAAGAGAGAGTCAACAGGAAAAGATGGATAAGAAACAGCATATTGACCATCTTACTCAACAGATGGGGCTTCTAGCATCAAAGTCTTAA 1494 0.429 MMAAAAAAAGSVNSGVAPFLSKTYDMVDDSCTDSMVSWGNNNNTFVVWNVTEFAKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQLLKSINRRKSAHVNGISQQPSQVQNSPVGACVEVGKFGIEEDIERLKRDKNVLMQELVRLRQQQQTTDNQLQTVGQRVQVMEQRQQQMMSFLAKAMHSPGFLSQFVQQQNESNRHITGGNKKRRLHRPEEDNLATNHLHNALDGRLVKYQPSINEAAKALFCQILQMNNSTRMESSIKNSDSFIIDEVLSAVPLDSSSSSTQVSGVTLSEVPPISRQSYMAAESQFPGSCMTNSISEVQSSPAVLTDCVEGAEFPELTVHTCDDNVLDFGEVQGMGAESSFMNPDLKFVGSDTVNDEEIDVMSTVLDGSQSVEADVFSTDADGISKLPGINDEFWELFLRPSPLTGDTDEVKCSSLVCGLTEDLEMSSERESQQEKMDKKQHIDHLTQQMGLLASKS 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00067 497 Coils Coil 136 163 - -
Gabi4003g00067 497 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4003g00067 497 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4003g00067 497 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4003g00067 497 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4003g00067 497 Gene3D - 11 109 IPR036388 -
Gabi4003g00067 497 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 312 IPR027725 -
Gabi4003g00067 497 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi4003g00067 497 FunFam Heat shock transcription factor 1 12 109 - -
Gabi4003g00067 497 SUPERFAMILY "Winged helix" DNA-binding domain 14 108 IPR036390 -
Gabi4003g00067 497 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00067 Gabi-Chr4003 563149 567000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00067 12 497 HSF AT5G16820 51.210 2.57e-150 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi4003g00067 HSF_DNA-bind 7.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00067 K09419 - qsa:O6P43_001765 588.956