Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00059 ATGATATCAGAATCTACTTGTGTTGAAACCTATCAACAGAGCACAGAATTCTCTGGACATAATAAAATTCTTTCAACTCCCCAAACTACCCATCTCTTTAGATCAAAATTACCAGACATACCCATCTCCAACAACCTTCCCCTTCACACCTACTGCTTCCATAAACTCCCCGAACTTTCCGACCGTCCATGTCTCATTGTCGGCGACAAAACCTACACCTACGCCGAAACTCACCTCGCATCTCGAAAGTTCGCCGCCGGTCTGTCCAATCTCGGCATCAACAAAGGTGATGTCATCATGATTCTCCTCCCAAACTCCCCGGAGTTCGTCTTCTCATTCATGGCGGCATCCATGATCGGCGCCGTCGCCACCACCGCCAACCCATTCTACACCGCCGCCGAAATCTCGAAGCAACTCACCGCTTCCAAAGCCAAACTCATCGTCACTCGTTCCACGTACGTCCACAAGCTCAACGTAGAGGATTTCAAGGTGATCACCGTCGACAACCCGCCGGAGAACTGCTTGCATTTCTCGGCTGTTTCCGAAGCCGACGAGAGCGAACTACCGGAGGTGGAGATCAACCCGGAGGACGACACGGTGGCGCTGCCGTTCTCCTCCGGGACAACGGGGTTACCGAAGGGCGTGGTTCTGACACACAAGAGTCTTATAACGAGCGTGGCTCAACAAGTTGACGGAGAGAACCCGAACCTGTACATGAAACCAGAGGACGTTGTGCTTTGCGTGCTTCCTTTGTTTCACATATTCTCGATGCACAGTGTGATGATGTGTGCGTTGAGAGCGGGGAGTGGGATTTTGCTGATGGAGAAGTTTGAGATAAGGGAATTGATGGAGATGATAGAGCGGCACAGGGTGTCGGTGGCGATGGTGGTGCCGCCGCTGGTGGTGGCAATGATAAAGAACCCGAGGGTGGAGGAGTATGACCTGAGCTCCGTACGGTTGGTGATGTCAGGGGCAGCGCCGCTTGGGAAGGAGCTTGAGGAGGCTCTTCGGAGCAGATTGCCTCATGCAGTTCTTGGGCAGGGCTACGGGATGACAGAGGCTGGGCCTGTGTTGTCGATGTGTTTGGGGTTTGCAAAACAGCCATTCCCATCGAAGTCAGGGTCATGTGGCACTGTAGTCAGAAATGCAGAGATAAAGGTCGTTGACCCTGAAACTGGTTCTTCTCTTTCCTATAATCAGCCTGGTGAGATTTGCATCCGAGGCCCACAGATCATGAAAGGATACCTGAATGACGAGAAGGCCACTGCAGCAACTATTGATGTAGAGGGTTGGCTACACACGGGAGATATTGGTTACGTAGATGATGATGATGAGATTTTCATTGTTGACAGGCTCAAGGAACTCATCAAATTTAAAGGCTTCCAGGTGCCGCCGGCAGAACTTGAAGGCCTTCTTGTGAGCCACCCTTCTATTGTGGATGCAGCTGTTATCCCGCAAATGGATGATGCTGCTGGTGAAGTTCCAGTTGCTTTCGTGGTTAGCTTTGATCTTACTGAAGAAGCTATAAAGGAGTTTATAGCTAAACAGGTAGTGTATTACAAAAGACTACGCAGAGTGTACTTTGTTCATGCCATTCCCAAGTCTCCATCCGGAAAAATATTAAGAAAAGACCTCAAAGCAAAGCTGGCAAGCATCACCCAGATGGCCTAG 1671 0.5039 MISESTCVETYQQSTEFSGHNKILSTPQTTHLFRSKLPDIPISNNLPLHTYCFHKLPELSDRPCLIVGDKTYTYAETHLASRKFAAGLSNLGINKGDVIMILLPNSPEFVFSFMAASMIGAVATTANPFYTAAEISKQLTASKAKLIVTRSTYVHKLNVEDFKVITVDNPPENCLHFSAVSEADESELPEVEINPEDDTVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLYMKPEDVVLCVLPLFHIFSMHSVMMCALRAGSGILLMEKFEIRELMEMIERHRVSVAMVVPPLVVAMIKNPRVEEYDLSSVRLVMSGAAPLGKELEEALRSRLPHAVLGQGYGMTEAGPVLSMCLGFAKQPFPSKSGSCGTVVRNAEIKVVDPETGSSLSYNQPGEICIRGPQIMKGYLNDEKATAATIDVEGWLHTGDIGYVDDDDEIFIVDRLKELIKFKGFQVPPAELEGLLVSHPSIVDAAVIPQMDDAAGEVPVAFVVSFDLTEEAIKEFIAKQVVYYKRLRRVYFVHAIPKSPSGKILRKDLKAKLASITQMA 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00059 556 SUPERFAMILY Acetyl-CoA synthetase-like 21 551 - -
Gabi4003g00059 556 FunFam 4-coumarate--CoA ligase 2 454 552 - -
Gabi4003g00059 556 Pfam AMP-binding enzyme C-terminal domain 467 539 IPR025110 -
Gabi4003g00059 556 FunFam Long-chain-fatty-acid--CoA ligase FadD 34 453 - -
Gabi4003g00059 556 Pfam AMP-binding enzyme 60 458 IPR000873 -
Gabi4003g00059 556 Gene3D - 24 452 IPR042099 -
Gabi4003g00059 556 CDD 4CL 42 545 - -
Gabi4003g00059 556 ProSitePatterns Putative AMP-binding domain signature. 202 213 IPR020845 -
Gabi4003g00059 556 Gene3D - 453 552 IPR045851 -
Gabi4003g00059 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 29 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00059 Gabi-Chr4003 488081 493829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00059 26 465 Monolignol Biosynthesis Gene Families AT1G65060 70.179 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00059 K01904 - gmx:547492 853.973