Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00055 ATGGCTTCCTCAAGCGGAACATCTTCAGGGTCATCTCAGCTTCAGAACTCTGGTTCAGAGGAGGGCTTGCAGGCGATGATGGATCAGAGGAAGAGGAAGAGGATGATATCAAATCGTGAATCGGCAAGGAGATCTCGAATGAGGAAACAGAAGCACTTGGATGATTTGGTTTCACAAGTGGCTCAGCTCAGAAAGGACAATCAAGAGATAAGCTCAAGCATTAACATCACCGCCCAACAGTACACGAGTGTTGAGGCTGATAACTCAGTGCTGAGGGCTCAAGTTGGAGAGTTAAGCCACAGGTTAGAGTCTTTGAATGAGATCATCAAGTTCTTAAATGCTAGCAGTGGGGTTTTTGGAGCTGCAGGTACATCAAGTACTTTCATTGAGCCAACAGATAGCTTCTTCAACCCATTGAATATGGCCTATATGAACCAGCCGATTATGGCTTCTGCAGACATATTGCATTACTGA 474 0.4536 MASSSGTSSGSSQLQNSGSEEGLQAMMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKDNQEISSSINITAQQYTSVEADNSVLRAQVGELSHRLESLNEIIKFLNASSGVFGAAGTSSTFIEPTDSFFNPLNMAYMNQPIMASADILHY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00055 157 FunFam BZIP transcription factor 28 79 - -
Gabi4003g00055 157 Coils Coil 53 73 - -
Gabi4003g00055 157 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Gabi4003g00055 157 SUPERFAMILY Leucine zipper domain 30 82 IPR046347 GO:0003700|GO:0006355
Gabi4003g00055 157 Pfam bZIP transcription factor 30 83 IPR004827 GO:0003700|GO:0006355
Gabi4003g00055 157 MobiDBLite consensus disorder prediction 25 53 - -
Gabi4003g00055 157 MobiDBLite consensus disorder prediction 1 53 - -
Gabi4003g00055 157 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Gabi4003g00055 157 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Gabi4003g00055 157 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4003g00055 157 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 154 - -
Gabi4003g00055 157 Gene3D - 28 81 - -
Gabi4003g00055 157 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00055 Gabi-Chr4003 425051 426507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00055 24 157 bZIP Transcription Factor Family AT4G34590 56.835 5.37e-51 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi4003g00055 bZIP_1 4.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00055 K25786 - gmx:100101862 229.18