Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00053 ATGAGAAGCGGTGTGTGTTATATGCTGTTGTGTGTTTCCTTGATTTGGTTCGGCGTAACGGTGTGCTCTTCATTAAGTGATATGGATGCGCTGCTGAAGCTGAAGGAATCCATGAAGGGAAAGAGAGCCAAAAACGATGCGCTTCAAGACTGGAAGTTTTCTACGTCAGTTTCGGCGCACTGTTCATTTTCAGGGATAACATGCGACCAAAACCTGCGAGTGATTGCTCTCAATGTGTCCTCTGTTCCACTCTTCGGGTATGTTACTCCTGAGATCGGATTCTTGGACAAGCTGGAGAATCTCACCATCGCTCAGGACAAACTCACCGGCCAGCTTCCGAAGGAGCTCGCCAATCTCACTTCTCTCAAGTTCCTCAACATTTCCCACAACGGCTTCTCCGGCCAATTCCCTGGCGAAATCACTCTCTCCATGACCAAACTGCAGTCCCTCGACGCCTACGACAACAACTTCACGGGACCACTTCCCGAGGAAATCGTCAAACTGGAGAAACTCAAGTACCTCATGCTCTCTGGTAACTATTTTTCTGGCAATATACCGGAGAGTTATTCGGAGTTTCAGAGCTTGGAGTATTTGAGCTTAAGCACTAACAGTCTAAGTGGCAAGATTCCAAAGAGCTTGAGTCGGCTGAAGACGCTGAAGAAACTGTATCTCGGGTACGACAATGCTTACGAAGGTGGAATCCCAGCAGAGCTTGGTTCCATGAAATCTCTTCAGCTTCTTGACTTGTCTAGCTGCAACTTGAACGGCGAGATTCCATCGAGCCTGAGCAACTTGACAAACCTGAACACCTTGTTCTTGCAAGTAAACAATCTCACCGGAACCATTCCGCCGGAGCTCTCTTCTATGATCAGCCTCGTGTCTTTGGACCTCTCCATCAACAACCTCACCGGTGAGATTCCGGAGAGTCTCTCTCAGCTCAGAAACCTTGTTCTCATGAACTTGTTCCAGAATAAGCTACGCGGCCCCCTCCCCAACTTCATCGCCGAACTTCCCAATCTGACAACGCTTCAGGTTTGGGAGAACAACTTCTCCTTCGTTCTGCCACAGAAACTTGGCCAAAATGGGAAGCTCATGTTTTTTGATGTCAGCAACAACCTCCTCACCGGATTGATCCCTCGTGATTTGTGCAAAGGAGGGAGGTTGCGAACGTTAATGCTCACCGATAACTTCTTCTACGGTCCAATCCCAAACGAGATCGGCGATTGCAAGTCTCTTTTCAAGATTCGACTTGCCGATAACTTCTTGGACGGGCAGCTTCCTTCGGGGATTTTCAAACTACCTACCGTTACACTAATCGAGCTCGGCAATAACCGTTTCAACGGCCAACTGCCTTCCGAGATTTCAGGCGATTATCTCGGGATCCTCACTCTTTCCAACAACTTACTCACGGGGAGTATCCCGCCTGCGTTGAAAAACCTCAGAAAATTACAGACTCTGTCCCTCGACGCGAACCAGTTCGTTGGCGAAATTCCAGAGGAGATTTTTGAATTACCAACAGTGACGAAGATCAACATAAGTGGCAACAATCTCACAGGTGAAATTCCAACGACGATGATTCATTGTGTTTCACTGACGGCCGTTGATCTGAGTCGGAACATGCTGTCCGGCGAGGTTCCAAAAGGGATAAAGAACCTCATGGACTTGAGCATCTTGAATCTATCAAGGAACCACATATCTGGTAAAATCCCTGACGAGATTCAATTCATGACGAGTCTCGTCACGCTGGATCTCTCCAACAACAATTTCATTGGAAGGGTCCCCAACGGGGGGCAGTTCTTAGTCTTCAACGACAAGTCGTTTGCGGGGAACCCCAACCTCTGTTCCCCCCTCCAGGCCTCTTGCCCATACGACGTCGGGTTGAGGAAACGACATGCCAAATCAATCACGAGGGTGATCGTCATTGTGATTGCACTCGTCACCGCCATGCTCCTGGTGTTGGTTACGGTGTACATGACGAGGAAGAGAAAGCGCCACAGAGCAATGGCGTGGAAGCTCACAGCCTTCCAGAGACTCGACTTCAAAGCAGTAGACGTGGAGAATTGCCTGAAAGAGGAGAATATAATAGGTAATGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAGCGGAACAGACATAGCAATAAAACGTTTGGTTGGAACAGGAATTGGACGAAACGGACGTTACGGATTCAAGGCGGAGATAGAGACACTAGGAAGGATAAGGCACAGGAATATCATAAAGCTTCTGGGGTACCTTTCGAAAAAGGACTCAAACTTGTTGCTGTATGAATACATGCCAAATGGGAGCTTGGGAGAATGGCTGCATGGTCCAAAGGTTGGGCATTTGAGGTGGGAGATGAGGTACAAGATTGCGGTTGAAGCAGCTAAGGGACTCTGCTATTTGCACCATGATTGTTCTCCTCTTATCATTCACAGGGACGTCAAGTCCAATAATATATTACTTGATGGAGACTTTGAGGCCCATATCGCTGATTTTGGACTTGCCAAGTTCTTGCACCACCCTGGAGCCTCTCAGTCCGTGTCCGTTATCGCTGGCTCCTATGGTTATATTGCTCCAGAGTATGCTTACACGCTGAAAGTGGATGAGAAAAGCGATGTGTATAGCTTTGGCGTGGTGCTGTTAGAGTTGATAGTGGGAAGAAAGCCGGTGGGTGACTTCGGAGATGGTGTGGACATCGTTGGATGGGTGAATAATACCAAATTAGAACTGTCTCAGCCGTCCGATGAAGCAATAGTGTTGGCAGTGGTGGACCCCAGGCTAACTGAATACCCGTTGACAAGTGTCATCCACATGTACAACGTAGCTATGATGTGTGTTAAAGAAATGGGGCCCGCCAGGCCTACCATGAGGGAAGTCGTCCATATGCTCACTAACCCTCCTCTGTCTACCGTTGAACCTAATTAG 2931 0.4845 MRSGVCYMLLCVSLIWFGVTVCSSLSDMDALLKLKESMKGKRAKNDALQDWKFSTSVSAHCSFSGITCDQNLRVIALNVSSVPLFGYVTPEIGFLDKLENLTIAQDKLTGQLPKELANLTSLKFLNISHNGFSGQFPGEITLSMTKLQSLDAYDNNFTGPLPEEIVKLEKLKYLMLSGNYFSGNIPESYSEFQSLEYLSLSTNSLSGKIPKSLSRLKTLKKLYLGYDNAYEGGIPAELGSMKSLQLLDLSSCNLNGEIPSSLSNLTNLNTLFLQVNNLTGTIPPELSSMISLVSLDLSINNLTGEIPESLSQLRNLVLMNLFQNKLRGPLPNFIAELPNLTTLQVWENNFSFVLPQKLGQNGKLMFFDVSNNLLTGLIPRDLCKGGRLRTLMLTDNFFYGPIPNEIGDCKSLFKIRLADNFLDGQLPSGIFKLPTVTLIELGNNRFNGQLPSEISGDYLGILTLSNNLLTGSIPPALKNLRKLQTLSLDANQFVGEIPEEIFELPTVTKINISGNNLTGEIPTTMIHCVSLTAVDLSRNMLSGEVPKGIKNLMDLSILNLSRNHISGKIPDEIQFMTSLVTLDLSNNNFIGRVPNGGQFLVFNDKSFAGNPNLCSPLQASCPYDVGLRKRHAKSITRVIVIVIALVTAMLLVLVTVYMTRKRKRHRAMAWKLTAFQRLDFKAVDVENCLKEENIIGNGGAGIVYRGSMPSGTDIAIKRLVGTGIGRNGRYGFKAEIETLGRIRHRNIIKLLGYLSKKDSNLLLYEYMPNGSLGEWLHGPKVGHLRWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDGDFEAHIADFGLAKFLHHPGASQSVSVIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGDFGDGVDIVGWVNNTKLELSQPSDEAIVLAVVDPRLTEYPLTSVIHMYNVAMMCVKEMGPARPTMREVVHMLTNPPLSTVEPN 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00053 976 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Gabi4003g00053 976 Pfam Leucine rich repeat 170 227 IPR001611 GO:0005515
Gabi4003g00053 976 Gene3D Ribonuclease Inhibitor 185 230 IPR032675 -
Gabi4003g00053 976 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Gabi4003g00053 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 229 334 - -
Gabi4003g00053 976 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Gabi4003g00053 976 Pfam Leucine rich repeat N-terminal domain 26 69 IPR013210 -
Gabi4003g00053 976 SMART LRR_typ_2 480 504 IPR003591 -
Gabi4003g00053 976 SMART LRR_typ_2 192 216 IPR003591 -
Gabi4003g00053 976 SMART LRR_typ_2 576 599 IPR003591 -
Gabi4003g00053 976 SMART LRR_typ_2 289 313 IPR003591 -
Gabi4003g00053 976 SMART LRR_typ_2 241 265 IPR003591 -
Gabi4003g00053 976 SMART LRR_typ_2 337 361 IPR003591 -
Gabi4003g00053 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Gabi4003g00053 976 SUPERFAMILY RNI-like 77 399 - -
Gabi4003g00053 976 Gene3D Phosphorylase Kinase; domain 1 654 766 - -
Gabi4003g00053 976 Pfam Protein tyrosine and serine/threonine kinase 690 965 IPR001245 GO:0004672|GO:0006468
Gabi4003g00053 976 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 228 966 - -
Gabi4003g00053 976 SUPERFAMILY Protein kinase-like (PK-like) 684 965 IPR011009 -
Gabi4003g00053 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 341 625 - -
Gabi4003g00053 976 Gene3D Ribonuclease Inhibitor 231 334 IPR032675 -
Gabi4003g00053 976 Gene3D Ribonuclease Inhibitor 353 624 IPR032675 -
Gabi4003g00053 976 SMART serkin_6 689 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00053 976 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515
Gabi4003g00053 976 ProSiteProfiles Protein kinase domain profile. 689 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00053 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 975 - -
Gabi4003g00053 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Gabi4003g00053 976 FunFam Leucine-rich repeat receptor-like protein kinase 24 187 - -
Gabi4003g00053 976 SUPERFAMILY RNI-like 346 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00053 Gabi-Chr4003 376077 379934 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00053 22 973 Receptor kinase-like Gene Family AT1G75820 62.069 0.0 1213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4003g00053 PK_Tyr_Ser-Thr 4.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00053 - - gmx:732625 1447.57