Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00051 ATGGAGAGGAATAAGGTGCTAGTTATGTGCTGTGTATTATTCTGCTTCATGCCCACGTTATCTAAGAATCAGTCTATACAAGATGATGAGACACTTGTTTCAGCAGGGAGAATTTTCGAAGCTGGATTCTTCAGCTTTGGAAATTCACAAAGCCAATACTTTGGTATATGGTACAAGAGCATATCACCAAGGACAATTGTGTGGGTAGCCAACAGAGATACCCCAGTTGAAAACTCAAAGCCAATTCTGAAGCTTACTGATCAAGGAAACCTCCTTATTCTTGATGGCTCAAGAGGTATAATCTGGATCTTCAACGCAACAAGAATTGCTGAGAAACCTTTCATGCAGCTTTTGGACTCAGGAAACCTTGTTGTGAAAGATGGAGAAAATGGGGAGAACCTTTTGTGGGAAAGCTTTGATTATCCTGGTGACACTTACCTTGCAGGAATGAAAATTAAGAGCAATTTGGTTACGGGTTCATATAGATCTCTCACATCTTGGAGAAACACACAAGACCCTGGTGTTGGTGATTTTTCATATCACATAGATACTCGTGGCTTTCCTCAACTAGTTGTTACAAAGGGTGCGACTGTAATATTCAGAGCAGGACCGTGGACTGGCAATATGTTTTCAGGTTCTTCTTGGCTTAGATTGCAGGAATTGTTGAAATTCTCTTTGCAATTTACTGACAAGGAAATCTCTTTGGAATATGAAACCTTGAACAGTTCAATTGTTACTAGAGCAGTGCTTACCCCATCAGGTATTACACAACGTTTGGTTTGGTTAGATAGAACTCGAGGTTGGGAGATTATATCTACTCATCCCATGGACCAGTGTGAATATTATGCCTTTTGTGGTGCTAATTCAAAGTGTGATACTGTTAACTATCCAATATGTGACTGTTTGGAAGGTTTCACTCCCAAATTTCAAGCAAAATGGAATTCATTAGATTGGACTGGTGGGTGTGTTAGAATACAAAATTTAAGTTGTCAGAATGGAGATGGCTTTCTGAAGCACACAGGAGTGAAGTTACCAGACACGTCTTCTTCCTTGTTTGACAAGAGCAAGAGCTTTGATGAATGTGAGACATTATGTTTGCAAAACTGTTCTTGCACAGCATATGCATATTTAGATGTTACAGTCGGTATGAGTGGTTGCTTGATTTGGTTTGGTGACATTTTGGACTTGAGAAAACACACTGACCAAGGACAGGATATCTACATACGAGTGGCTGCTTCAGAGCTAGATCATAGAAAGAGTAAGAGGAACTTTAATAGCAAGAAGCTTGCAGGGACTCTAGTAGGAATCATTACATTCATCATATGCATAGCAATCCTTGGATTAGTCAAATCCTCTTGTATACAGAGGAAGAAGAATGAGAAGTCAGGAATTATAAATCATTGCAACGACAAGGGAGGGGAGGAAGACATCAATTTGGCAATAATATTTGATTTTTCATTCATCTCTAATGCCACAAATCACTTCTCACAAAGTAACAAATTAGGAGAAGGTGGCTTTGGACCAGTATACAAGGGCTTATTAGCAGGTGGACAAGAGATTGCCGTCAAGAGGCTTTCAAATACTTCTGGACAAGGAACAGAGGAGTTCAAAAATGAAGTCATGTTGATGGCAAGACTTCAGCACCGCAATCTTGTAAAGCTTCTTGGTTGTTCTATTTTTCAAGATGAAAAGTTGTTGATCTATGAATTCATGCCTAATAGAAGCTTGGATTACTTTATTTTTGATTCAATGCAAAGTAAACTATTAGATTGGAATAAGCGGTTCCAAATTATTGATGGGATTGCTCGAGGGCTTCTTTATCTTCACCAAGACTCAAGACTAAGAATCATCCACAGAGATCTAAAGACTAGTAACATTCTTCTTGATGATGAAATGAACCCAAAGATATCAGATTTTGGTTTGGCTAGAATATTTAGAGGAGACCAAGTTGAAGCCAAAACAAAAAGAGTGATGGGCACATATGGTTATATGCCTCCAGAGTATGCTGTGCATGGATCTTTTTCAACCAAATCTGATGTTTTTAGCTTTGGTGTAATTGTACTTGAGATAATTAGCGGAAGGAAGATTAGGGGATTTTGTGACCCGCACCATCATCTTAATCTTCTTAGTCATGCATGGAGACTATGGATTGAAGAAAGACCCCAAGAGCTGATAGATGAGTTATTAGCTGATTCAGTTATCCCATCCGAAATATTGCGACTTATTCATGTGGGTCTATTATGCGTACAACAGAGACCAGAAAATAGGCCTAACATGTCATCTGTGGTTATAATGTTAAAGGGCGAAAAAGTACTCCCAAAGCCAAGCCAACCCGGGTTCTACACAGGAAATGATAATCCACTTTTTTCTGAATCTTCAAAAAATTGTGAAAGGTGTTCAACAAATGAAATTTCCATCTCATTAATAGAGGCAAGATAG 2439 0.3879 MERNKVLVMCCVLFCFMPTLSKNQSIQDDETLVSAGRIFEAGFFSFGNSQSQYFGIWYKSISPRTIVWVANRDTPVENSKPILKLTDQGNLLILDGSRGIIWIFNATRIAEKPFMQLLDSGNLVVKDGENGENLLWESFDYPGDTYLAGMKIKSNLVTGSYRSLTSWRNTQDPGVGDFSYHIDTRGFPQLVVTKGATVIFRAGPWTGNMFSGSSWLRLQELLKFSLQFTDKEISLEYETLNSSIVTRAVLTPSGITQRLVWLDRTRGWEIISTHPMDQCEYYAFCGANSKCDTVNYPICDCLEGFTPKFQAKWNSLDWTGGCVRIQNLSCQNGDGFLKHTGVKLPDTSSSLFDKSKSFDECETLCLQNCSCTAYAYLDVTVGMSGCLIWFGDILDLRKHTDQGQDIYIRVAASELDHRKSKRNFNSKKLAGTLVGIITFIICIAILGLVKSSCIQRKKNEKSGIINHCNDKGGEEDINLAIIFDFSFISNATNHFSQSNKLGEGGFGPVYKGLLAGGQEIAVKRLSNTSGQGTEEFKNEVMLMARLQHRNLVKLLGCSIFQDEKLLIYEFMPNRSLDYFIFDSMQSKLLDWNKRFQIIDGIARGLLYLHQDSRLRIIHRDLKTSNILLDDEMNPKISDFGLARIFRGDQVEAKTKRVMGTYGYMPPEYAVHGSFSTKSDVFSFGVIVLEIISGRKIRGFCDPHHHLNLLSHAWRLWIEERPQELIDELLADSVIPSEILRLIHVGLLCVQQRPENRPNMSSVVIMLKGEKVLPKPSQPGFYTGNDNPLFSESSKNCERCSTNEISISLIEAR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00051 812 PIRSF SRK 4 812 IPR024171 GO:0004674
Gabi4003g00051 812 SMART serkin_6 495 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00051 812 Gene3D Hepatocyte Growth Factor 326 408 - -
Gabi4003g00051 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 15 139 - -
Gabi4003g00051 812 Pfam D-mannose binding lectin 65 168 IPR001480 -
Gabi4003g00051 812 SMART blect_4 23 142 IPR001480 -
Gabi4003g00051 812 ProSiteProfiles Bulb-type lectin domain profile. 17 138 IPR001480 -
Gabi4003g00051 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
Gabi4003g00051 812 ProSiteProfiles PAN/Apple domain profile. 330 411 IPR003609 -
Gabi4003g00051 812 CDD B_lectin 23 142 IPR001480 -
Gabi4003g00051 812 SMART ntp_6 331 410 IPR003609 -
Gabi4003g00051 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 207 IPR036426 -
Gabi4003g00051 812 Pfam S-locus glycoprotein domain 200 309 IPR000858 GO:0048544
Gabi4003g00051 812 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00051 812 CDD PAN_AP_plant 326 411 - -
Gabi4003g00051 812 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Gabi4003g00051 812 SUPERFAMILY Protein kinase-like (PK-like) 480 766 IPR011009 -
Gabi4003g00051 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 570 - -
Gabi4003g00051 812 Gene3D - 15 139 IPR036426 -
Gabi4003g00051 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Gabi4003g00051 812 CDD STKc_IRAK 501 768 - -
Gabi4003g00051 812 Pfam PAN-like domain 330 396 IPR003609 -
Gabi4003g00051 812 Pfam Protein tyrosine and serine/threonine kinase 497 763 IPR001245 GO:0004672|GO:0006468
Gabi4003g00051 812 Gene3D Phosphorylase Kinase; domain 1 471 570 - -
Gabi4003g00051 812 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00051 Gabi-Chr4003 360586 364058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00051 430 780 Receptor kinase-like Gene Family AT4G23230 52.557 2.65e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4003g00051 PK_Tyr_Ser-Thr 1.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00051 - - lja:Lj3g3v3375760.2 1199.5