Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00050 ATGAGAAGCGGTGTGTGTTATATGCTGTTGTGTGTTTCCTTGATTTGGTTCGGCGTAACGGTGTGCTCTTCATTAAGTGATATGGATGCGCTGCTGAAGCTGAAGGAATCCATGAAGGGAAAGAGAGCCAAAAACGATGCGCTTCAAGACTGGAAGTTTTCTACGTCAGTTTCGGCGCACTGTTCATTTTCAGGTGTAACATGCGACCAAAACCTGCGAGTGATTGCTCTCAATGTGTCCTTTGTTCCACTCTTCGGGTATGTTCCTCCTGAGATCGGATTCTTGGACAAGCTGGAGAATCTCACCATCGCTCAGGACAAACTCACCGGCCAGCTTCCGAAGGAGCTCGCCAATCTCACTTCTCTCAAGTTCCTCAACATTTCCCACAACGGCTTCTCCGGCCAATTCCCTGGCAAAATCACTCTCTCCATGACCAAACTGGAGTTCCTCGATGCTTACGACAACAACTTCACGGGACCACTTCCCGAGGAAATCGTCAAACTGGAGAAACTCAAGTACCTCATGCTCTCCGGTAACTATTTTTCCGGCAATATACCGGAGAGTTATTCGGAGTTTCAAAGCTTGGAGTATTTGAGCTTAAGCACCAACAGTCTAAGTGGCAAGATTCCAAAAAGCTTGAGTCGGCTGAAGACGCTGAAGAAACTATATCTCGGGTACAACAATGCTTACGAAGGTGGAATCCCAGCAGAACTTGGTTCCATGAAATCTCTTCAACTTCTTGACTTGTCTAGTTGTAACCTGAGCGGCGAGATTCCACCGAGCCTGAGCAACTTGACAAACCTGAACACCTTGTTCTTGCAAATAAACAATCTCACCGGAACCATTCCGCCGGAGCTCTCTTCCATGATGAGCCTCATGTCACTGGACCTCTCCATCAACGACCTCACCGGTGAGATTCCGGAGAGTTTCTCTCAGCTCAGAAACCTTACTCTCATCAACTTCTTCCAGAATAAGCTCCGTGGCTCCCTCCCCAACTTCATCGCCGAGCTTCCCAATCTGGAAACGATTCAGGTTTGGGAGAACAATTTCTCCTTCGTTCTGCCACAGAAACTAGGCCAAAACGGAAAGCTCAAGTTCTTCGACGTCACCAGGAACCACCTCACAGGATTGATTCCTCGTGATTTGTGCAAAGGAGGGAGGTTGCAAACGTTTATGCTCACCGATAACTTCTTCTACGGTCCAATCCCCGAGGAAATTGGCGATTGCAAGTCTCTTGTCAAGATTCGACTCGCCAATAACTTCTTGGACGGGCCGGTTCCTCCGGGGATTTTAAAACTACCTTCCGTTACACTAATCGAGCTCGGCAATAACCGTTTCAACGGCCAACTACCTTCCGAGATTTCAGGCGATAATCTCGGGATCCTCACTCTTTCCAACAATTTACTCACGGGGAGTATTCCGCCTGCGTTGAAAAACCTCAGAAAATTACAGACTCTGTCCCTCGACGCTAACCAGTTCGTTGGCGAAATCCCAGGGGAGATTTTTGAACTACCAACGTTGACGAAGATCAACATAAGCGGCAACAATCTCACCGGTAAAATCCCAACGTCGATGATCCACTGCGTTTCACTAACGGCCGTTGATCTGAGCCGGAATGTGCTGTCCGACGAGGTTCCGAAGGGGATAAAGAACCTCATGGACTTGAGCATCTTGAATCTATCAAGGAACCATATATCAGGGCCAATCCCTGATGAGATTCGATTCATGACGAGCCTCACCACGCTTGATATCTCCAACAACAATTTCATTGGAAGGGTCCCCATCGGGGGACAGTTCTTAGTCTTCAACGACAAGTCATTTTCGGGGAACCCCAACCTCTGTTCCCCCCACCAGGCCTCTTGCCCATACGACGTCGAGTTGAGGAAACAACATACCAAATCAATCACGAGGGTGATCATCATTGTGATTGCACTAGCCACCGCCACGCTCCTGGTTCTGGTCACGGTGTACATGACGAGGAAGAGAAAGCTCCACAGAGCAATGGCGTGGAAGCTCACGGCGTTCCAGAGACTCGACTTCAAAGCAGAAGACGTGGAGAAGTGCCTGAAGGAGGAGAACATAATAGGAAAAGGAGGAGCGGGGATCGTGTACAGAGGGTCCATGCCAAACGGAACGGACATAGCCATAAAGCGTTTGGTTGGTGCAGGAAGTGGACGAAACGATTATGGATTCAAAGCGGAGATAGAGACACTTGGGAAGATAAGGCACCGGAATATCATGAGGCTTCTTGGTTACGTTTCGAAAAAGGACTCAAACTTGTTGCTGTATGAATACATGCCAAATGGGAGCTTAGGAGAGTGGCTGCATGGTCCAAAAGGTGGACACTTGAGGTGGGAAATGAGGTACAAGATTGCGGTTGAAGCAGCTAAGGGACTCTGCTACTTGCACCATGATTGTTCTCCTCTTATCATTCACAGGGACGTCAAATCCAATAATATATTGCTCGATGGAAACTTTGAGGCCCATGTAGCTGATTTTGGACTTGCAAAGTTCTTGCACGACCCAGGTGCCTCCCAATCCATGTCTGCTATCGCTGGTTCCTATGGTTACATTGCTCCAGAGTATGCTTACACACTGAAAGTGGATGAGAAAAGCGATGTGTATAGCTTTGGCGTTGTGCTGTTGGAGCTGATAGTAGGAAGAAAGCCGGTGGGTGAGTTTGGAGATGGTGTGGACATCGTTGGATGGGTGAATAATACGAAATTAGAACTGTCTCAGCCGTCCGATACAGCATTAGTGTTGGCAGTGGTGGACCAAAGACTCAATGGATATCCATTGACAAGTGTCATCCACATGTTCAACGTAGCTATGATGTGTGTTAAAGAAATGGGGCCCGCCAGGCCTAACATGAGGGATGTCGTCCATATGCTCACTAACCCTCCTCAGTCTACTACTGTTCATAATCTAATTAATCTCTAG 2940 0.4803 MRSGVCYMLLCVSLIWFGVTVCSSLSDMDALLKLKESMKGKRAKNDALQDWKFSTSVSAHCSFSGVTCDQNLRVIALNVSFVPLFGYVPPEIGFLDKLENLTIAQDKLTGQLPKELANLTSLKFLNISHNGFSGQFPGKITLSMTKLEFLDAYDNNFTGPLPEEIVKLEKLKYLMLSGNYFSGNIPESYSEFQSLEYLSLSTNSLSGKIPKSLSRLKTLKKLYLGYNNAYEGGIPAELGSMKSLQLLDLSSCNLSGEIPPSLSNLTNLNTLFLQINNLTGTIPPELSSMMSLMSLDLSINDLTGEIPESFSQLRNLTLINFFQNKLRGSLPNFIAELPNLETIQVWENNFSFVLPQKLGQNGKLKFFDVTRNHLTGLIPRDLCKGGRLQTFMLTDNFFYGPIPEEIGDCKSLVKIRLANNFLDGPVPPGILKLPSVTLIELGNNRFNGQLPSEISGDNLGILTLSNNLLTGSIPPALKNLRKLQTLSLDANQFVGEIPGEIFELPTLTKINISGNNLTGKIPTSMIHCVSLTAVDLSRNVLSDEVPKGIKNLMDLSILNLSRNHISGPIPDEIRFMTSLTTLDISNNNFIGRVPIGGQFLVFNDKSFSGNPNLCSPHQASCPYDVELRKQHTKSITRVIIIVIALATATLLVLVTVYMTRKRKLHRAMAWKLTAFQRLDFKAEDVEKCLKEENIIGKGGAGIVYRGSMPNGTDIAIKRLVGAGSGRNDYGFKAEIETLGKIRHRNIMRLLGYVSKKDSNLLLYEYMPNGSLGEWLHGPKGGHLRWEMRYKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDGNFEAHVADFGLAKFLHDPGASQSMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNNTKLELSQPSDTALVLAVVDQRLNGYPLTSVIHMFNVAMMCVKEMGPARPNMRDVVHMLTNPPQSTTVHNLINL 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00050 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 341 625 - -
Gabi4003g00050 979 SMART serkin_6 689 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00050 979 Pfam Leucine rich repeat N-terminal domain 26 69 IPR013210 -
Gabi4003g00050 979 Pfam Leucine rich repeat 170 228 IPR001611 GO:0005515
Gabi4003g00050 979 Pfam Leucine rich repeat 481 541 IPR001611 GO:0005515
Gabi4003g00050 979 Gene3D Transferase(Phosphotransferase) domain 1 766 975 - -
Gabi4003g00050 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Gabi4003g00050 979 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 193 959 - -
Gabi4003g00050 979 Pfam Leucine Rich repeat 577 591 IPR001611 GO:0005515
Gabi4003g00050 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 766 978 - -
Gabi4003g00050 979 Gene3D Ribonuclease Inhibitor 348 624 IPR032675 -
Gabi4003g00050 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 765 - -
Gabi4003g00050 979 SUPERFAMILY RNI-like 77 399 - -
Gabi4003g00050 979 SUPERFAMILY L domain-like 330 637 - -
Gabi4003g00050 979 Gene3D Ribonuclease Inhibitor 230 333 IPR032675 -
Gabi4003g00050 979 Gene3D Ribonuclease Inhibitor 142 229 IPR032675 -
Gabi4003g00050 979 Pfam Protein tyrosine and serine/threonine kinase 690 963 IPR001245 GO:0004672|GO:0006468
Gabi4003g00050 979 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 229 334 - -
Gabi4003g00050 979 Gene3D Ribonuclease Inhibitor 26 141 IPR032675 -
Gabi4003g00050 979 ProSiteProfiles Protein kinase domain profile. 689 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4003g00050 979 FunFam Leucine-rich repeat receptor-like protein kinase 24 187 - -
Gabi4003g00050 979 SUPERFAMILY Protein kinase-like (PK-like) 684 964 IPR011009 -
Gabi4003g00050 979 Pfam Leucine Rich Repeat 243 265 IPR001611 GO:0005515
Gabi4003g00050 979 SMART LRR_typ_2 265 289 IPR003591 -
Gabi4003g00050 979 SMART LRR_typ_2 192 216 IPR003591 -
Gabi4003g00050 979 SMART LRR_typ_2 433 457 IPR003591 -
Gabi4003g00050 979 SMART LRR_typ_2 241 264 IPR003591 -
Gabi4003g00050 979 SMART LRR_typ_2 337 361 IPR003591 -
Gabi4003g00050 979 SMART LRR_typ_2 480 504 IPR003591 -
Gabi4003g00050 979 Gene3D Phosphorylase Kinase; domain 1 653 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00050 Gabi-Chr4003 332639 336021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00050 22 977 Receptor kinase-like Gene Family AT1G75820 63.580 0.0 1244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4003g00050 PK_Tyr_Ser-Thr 2.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00050 - - lja:Lj3g3v3375770.1 1526.15