Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00041 ATGGGAGAGGTAGCGCGTGGAGGTTGTTGCCCTCCGATGGATCTGTTCCGTTCGGAGCCGATGCAACTGGTTCAGCTCATCATCCCTATTGAATCAGCTCATGTCACTGTCTCCTACCTCGGCGACCTTGGCCTCGTTCAGTTCAAAGATCTCAATGCAGAGAAGAGCCCTTTTCAACGGACTTATGCATCTCAGATAAAAAGATGCGGAGAGATGGCTCGTAAATTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCACCAAAATATTCCACAACACCGGCTGATGTGAACTTTGATGACCTTGAGGTAAAACTTACAGAAATTGAGTCAGAATTAACTGAGATGAATGCAAACAGTGAAAAGTTGCAACGCGCGTACAATGAACTTGTGGAGTATAAGCTTGTTGTGCAGAAGGCTGGTGATTTTTTTCACTCAGCTCAAAGCCGTGCCATAGAGCAGCAGAGAGAATTGGAATCACGCCATCTTAGTGGTGAATCAATGGAAACACCTTTACTACAGGACCGAGAATTGCCAGGTGATTCATCGAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGAAAAGTCCATTTCATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTGTTTTTGAGGCAGACTGTTATTGAGGATCCCATCACAGACCCTGTTTCTGGAGAAAAGACTGAGAAAAATGTGTTTGTGGTCTTCTATGCCGGCGAAAAAGCAAAAGCTAAGATTCTGAAAATATGTGATGCCTTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTTGGAAAACAAGCTCAAATGATTACAGAGGTTTCTGGAAAACTTTCAGAGTTGAAGACCACTATAGATGCTGGACTCATGCACCGTGGTAACCTGCTACATACTATTGGAGCTCAATTTGAGCAATGGAATATTTTGGTGAGGAAGGAGAAATCTATTTACCATATCCTGAACATGTTAAGCCTTGATGTGACAAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACAAAGCAGATCCAAGATGCATTGCAGCGAGCAACATTTGACGCCAATTCTCAAGTCGGTGCCATTTTCCAAGTTTTGAATACTAGAGAGATGCCACCTACCTATTTTCGCACAAACAAATTCACTTCTCCATTTCAAGAAATTATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCTACTTTGTTTACTGTAGTTACCTTTCCATTTCTTTTTGCCGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTCGATGACATAACGGAGATGACTTTTGGAGGTCGTTATGTTATTATATTGATGGCACTCTTCTCAATCTACACTGGTTTTATCTATAATGAGTTCTTTTCTGTCCCATTTGAAATCTTCGGTCCCTCTGCATATGAATGTCGTGACCTTTCTTGCAGGGATGCTACGACAGTGGGCCTGATAAAAGTGCGTCGCACTTACCCTTTTGGAGTGGATCCTGTATGGCATGGTTCACGAAGTGAATTACCATTCCTTAACTCATTGAAAATGAAAATGTCAATTCTTCTCGGGGTTGCTCAAATGAACCTTGGAATTATAATGAGCTATTGCAATGCCAAATTCTTTAGGAACAACGTAAATGTATGGTTCCAATTCATTCCCCAGATGATATTTCTCAATAGTCTATTTGGCTACCTGTCCCTTCTTATTATTTGGAAGTGGGTCACTGGTTCTCAAGCTGATTTGTACCATGTAATGATCTACATGTTCCTGAGCCCGACAGATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAGAAAAACCTGCAGCTTGTGCTTTTGCTTCTAGCTGTTGTCGCTGTGCCGTGGATGCTTTTGCCAAAACCTTTTATTTTGAAGAAGCAACATCAAGATAGGCATGGAGTTGAATCCTATATACCACTCGAAAGCACAGAGGAGAGCTTGCAAGTGGAGGCAAGTCATGATTCCCATGGTCATGAGGAATTTGATTTCAGTGAAATCTTTGTACATCAACTCATTCACACCATAGAATTTGTACTTGGAGCAGTCTCCAATACAGCTTCTTACCTTCGTCTGTGGGCCCTTAGTCTTGCTCATTCAGAGTTATCAAGTGTATTCTACGAGAAGGTTCTGATGATGGCATGGGGGTACAATAATGTGATTATCCTGATAGTGGGTATCGTCGTCTTCGTTTTTGCTACTGTTGGTGTGTTACTTGTCATGGAAACTCTGAGCGCTTTCTTGCATGCTTTACGACTTCACTGGGTGGAGTACCAAAACAAGTTTTATGAGGGCGACGGTTACAAGTTCAACCCTTTCTCGTTTTCATTGCTAGACGAAGAGGATGACTGA 2460 0.4211 MGEVARGGCCPPMDLFRSEPMQLVQLIIPIESAHVTVSYLGDLGLVQFKDLNAEKSPFQRTYASQIKRCGEMARKLRFFKEQMLKAGVSPKYSTTPADVNFDDLEVKLTEIESELTEMNANSEKLQRAYNELVEYKLVVQKAGDFFHSAQSRAIEQQRELESRHLSGESMETPLLQDRELPGDSSKQVKLGFLAGLVPREKSISFERILFRATRGNVFLRQTVIEDPITDPVSGEKTEKNVFVVFYAGEKAKAKILKICDAFGANRYPFAEELGKQAQMITEVSGKLSELKTTIDAGLMHRGNLLHTIGAQFEQWNILVRKEKSIYHILNMLSLDVTKKCLVAEGWSPVFATKQIQDALQRATFDANSQVGAIFQVLNTREMPPTYFRTNKFTSPFQEIIDSYGVAKYQEANPTLFTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVIILMALFSIYTGFIYNEFFSVPFEIFGPSAYECRDLSCRDATTVGLIKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNAKFFRNNVNVWFQFIPQMIFLNSLFGYLSLLIIWKWVTGSQADLYHVMIYMFLSPTDDLGENQLFVGQKNLQLVLLLLAVVAVPWMLLPKPFILKKQHQDRHGVESYIPLESTEESLQVEASHDSHGHEEFDFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLMMAWGYNNVIILIVGIVVFVFATVGVLLVMETLSAFLHALRLHWVEYQNKFYEGDGYKFNPFSFSLLDEEDD 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00041 819 Coils Coil 101 128 - -
Gabi4003g00041 819 Pfam V-type ATPase 116kDa subunit family 39 811 IPR002490 GO:0033179|GO:0046961|GO:1902600
Gabi4003g00041 819 PIRSF ATP6V0A1 11 819 IPR026028 GO:0000220|GO:0046961
Gabi4003g00041 819 MobiDBLite consensus disorder prediction 158 182 - -
Gabi4003g00041 819 PANTHER VACUOLAR PROTON ATPASES 15 817 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00041 Gabi-Chr4003 290515 301370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00041 13 819 Primary Pumps ATPases(2) AT4G39080 77.627 0.0 1301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00041 K02154 - gmx:100810062 1457.97