Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi4003g00040 | ATGGCTTCCGATTCTTCTCCAACTAATTTCAACAACGGACCTTCATCCCCTGACGATTCCCTTTCGAGCCCCATCGGAAACACGTTCTCCTCTCCCGGCGGGAGACGCCGCCGCCGATCTTCCACCCCGTCCGCATTCGGAACGCCGACGAATCGATCTCGATTCGCCCCCGCCGATGCCACCCCAACTCCGTCACGCTCCAGGCAAAGAGGCAGCGGCGGCGGAGGAGGAGGAGGGCGCGTTCCTGCCACGCCCACCTCCACCACCGACGACGTGCCTGTGTCGTCCGATGGCGGCGACAGCTACGACATGTACGACGCCAGGCCTACCTTCGTGTGGGGTACGAATATTAGCGTAGAAGATGTGAATGACGCGATTCAGAGGTTTCTGAGGGACTTCAGAGAACCTTCTTCGACGCAGGGTGATGTTGACGGTTTGCATTTGCATACCGAAGGGAAGTATGAGAAATTAATCAAAGATGTGATTGAAATTGAAAGAGATTATCTCGACGTCGATGCACGTGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGGTATCCCATCGAGGTGCTTGCAATTTTTGACTTGGTTTTGATGAATATGGTTGGCCGAATGAAACCCATGTTCGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAAACCTCAACTTCAATGAGAAATTTGAACCCGTCTGATGTTGAGAGGATGGTTTCATTGAAGGGAATGATCATACGATGTAGCTCTATCATACCGGAAATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATACTGCTCTGACCCAGTTACTGTGGAGAGAGGACGAATTACCGAACCTACTATATGCTTGAGGGAAGAGTGTAAGTCCAGGAACTCCATGACACTGGTTCACAACCGATGCAGGTTTAATGATAAGCAAATTGTGAGGCTCCAGGAGACCCCGGACGAGATACCTGAAGGTGGAACACCTCACACAGTTAGCTTGCTGTTGCATGACAAGCTCGTAGATACTGGAAAGCCTGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAAAAGGCTGATAAGTCCAGGATGCTGGTAGAGGACGCTATGGAGGTTGATAATGGCAACCGCAAAAACGAAGAAGTTTTCTTTGATGAAGAAAAAGTGGCTCAACTGAAGGAGCTCTCAAAGCAGCCAGATATATATGAAAAACTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTTGACGATGTGAAGAGAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCTTTGAAGTTGGCATCAGGTGCTAGCTTCCGAGGTGATATAAATATTCTTCTTGTTGGTGACCCTGGGACGAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACAAGTGGAAGGGGGAGTTCTGCCGTCGGATTGACTGCTTACGTTACCAAGGATCCTGAAACAGGCGAAACTGTTCTAGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGCTGCATAGATGAATTCGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATTGCTAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCAGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTCTGTCCAGGTTCGATTTAATTTACTTAATTCTTGACAAAGCTGATGAACAGACTGACAGACGACTTGCCAAACATATTGTTTCCCTACACTTTGAGAATCCCGAGAACATGGAGCAGGACGTGCTGGATATTTCTATACTAACTGATTATGTGAGCTATGCCCGAAAGCACATAAACCCACAGCTGTCTGACGAAGCTGCTGAAGAATTGATTAGAGGTTACGTGAAAATAAGGGAAAAGGGAAATTTTCCTGGGAGTAGCAAGAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCACGGATTCGCTTCTCAGAATGGGTTGAATTGAGTGACGTAACGGAGGCATTTCGGCTGCTGGAAGTTGCGATGCAACAGTCTGCGACGGATCCCTATACAGGAGCTATTGACTTGGATCTTATTACTACTGGGGTTTCGGCAAGTGAAAGGATGAGACGTGAAAGTCTGTTAAAAGCAACCCGCATCATAATCATGGAGAAGATGCCAATTGGGGGACCATCCATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAAAACACTGGCGGTGAAGTTCATCTCACTGATCTAAGGACTGCAATTGATACTCTCGTCAGCGAAGGATTTGTTACCATGCATGGTGACAGCGTAAAAAGATCATGA | 2517 | 0.4672 | MASDSSPTNFNNGPSSPDDSLSSPIGNTFSSPGGRRRRRSSTPSAFGTPTNRSRFAPADATPTPSRSRQRGSGGGGGGGRVPATPTSTTDDVPVSSDGGDSYDMYDARPTFVWGTNISVEDVNDAIQRFLRDFREPSSTQGDVDGLHLHTEGKYEKLIKDVIEIERDYLDVDARDVFDHDPDLYTKMVRYPIEVLAIFDLVLMNMVGRMKPMFEKHIQTRIFNLKTSTSMRNLNPSDVERMVSLKGMIIRCSSIIPEIREAIFRCLVCGYCSDPVTVERGRITEPTICLREECKSRNSMTLVHNRCRFNDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKADKSRMLVEDAMEVDNGNRKNEEVFFDEEKVAQLKELSKQPDIYEKLTKSLAPNIWELDDVKRGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPENMEQDVLDISILTDYVSYARKHINPQLSDEAAEELIRGYVKIREKGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVELSDVTEAFRLLEVAMQQSATDPYTGAIDLDLITTGVSASERMRRESLLKATRIIIMEKMPIGGPSMRLLELLEELKKQNTGGEVHLTDLRTAIDTLVSEGFVTMHGDSVKRS | 838 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi4003g00040 | 838 | MobiDBLite | consensus disorder prediction | 1 | 101 | - | - | |
| Gabi4003g00040 | 838 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 439 | 753 | IPR027417 | - | |
| Gabi4003g00040 | 838 | ProSitePatterns | MCM family signature. | 537 | 545 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Gabi4003g00040 | 838 | Pfam | MCM AAA-lid domain | 654 | 740 | IPR041562 | - | |
| Gabi4003g00040 | 838 | Gene3D | - | 230 | 369 | IPR012340 | - | |
| Gabi4003g00040 | 838 | FunFam | DNA helicase | 257 | 309 | - | - | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 529 | 543 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 557 | 570 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 469 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 581 | 593 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 608 | 616 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 444 | 455 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 742 | 751 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 252 | 265 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 303 | 315 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi4003g00040 | 838 | PRINTS | Mini-chromosome maintenance (MCM) protein 4 signature | 590 | 607 | IPR008047 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi4003g00040 | 838 | SMART | AAA_5 | 470 | 620 | IPR003593 | GO:0016887 | |
| Gabi4003g00040 | 838 | Gene3D | - | 257 | 309 | - | - | |
| Gabi4003g00040 | 838 | Pfam | MCM OB domain | 230 | 359 | IPR033762 | - | |
| Gabi4003g00040 | 838 | Gene3D | - | 116 | 224 | - | - | |
| Gabi4003g00040 | 838 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 123 | 780 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | ProSiteProfiles | MCM family domain profile. | 428 | 634 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | Pfam | MCM N-terminal domain | 125 | 223 | IPR027925 | - | |
| Gabi4003g00040 | 838 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Gabi4003g00040 | 838 | SUPERFAMILY | Nucleic acid-binding proteins | 149 | 380 | IPR012340 | - | |
| Gabi4003g00040 | 838 | Gene3D | - | 409 | 752 | IPR027417 | - | |
| Gabi4003g00040 | 838 | CDD | MCM4 | 431 | 740 | - | - | |
| Gabi4003g00040 | 838 | SMART | mcm | 226 | 742 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | Pfam | MCM P-loop domain | 416 | 638 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi4003g00040 | 838 | FunFam | DNA helicase | 409 | 747 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi4003g00040 | Gabi-Chr4003 | 268247 | 273488 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi4003g00040 | 1 | 837 | Core DNA Replication Machinery Family | AT2G16440 | 73.239 | 0.0 | 1226 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi4003g00040 | K02212 | - | gmx:100782586 | 1419.83 |