Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00039 ATGTCAAGAACGCAAGGCAAAGAAGTAGTAAAGGATTCAAAGTGTGAAGACTGTGGGAATCAAGCAAAGAAGGATTGTGCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTCAGTGCAAAACCCATATTAGAAGCACATGGATTCCTGTCGATAGAAGGCGCCAGAGATTGGAGCAGCCATCTCCTACCACTAATCCACACCAAAGCCACAAGCACAACCCATATTCAAGTTTAGAGGAGTTCAAATTTCCAGCTGCTATGAATTCCATGACTGTATTCAACTGTGTTCAGGTGCGGTCTATGGATGATAGTGTTAATGAAATGGCCTATCAAACATCTGTGAATATTGGAGGGCATGTATTTAGTGGTGTTCTTTATGATCAAGGCCCTGAACAAAGCTTCAATGATGCTAGGGGAGACAGCACCATACACCAGCACAATCTCAATCTTACCAGTGCTGCAATCCACACACGTGATGGTGCAACTATGGCTCCACTATCAGCCACTCCTGCTCATGAGCTTTATTTTCCTCAACCGCATCCGTTTCCCTTATCTTCCTTCAGGCCTGGTATGCCATATTTTTCACACCCAAAACCTTAA 609 0.4401 MSRTQGKEVVKDSKCEDCGNQAKKDCAYSRCRTCCKNKGFQCKTHIRSTWIPVDRRRQRLEQPSPTTNPHQSHKHNPYSSLEEFKFPAAMNSMTVFNCVQVRSMDDSVNEMAYQTSVNIGGHVFSGVLYDQGPEQSFNDARGDSTIHQHNLNLTSAAIHTRDGATMAPLSATPAHELYFPQPHPFPLSSFRPGMPYFSHPKP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00039 202 Pfam Domain of unknown function (DUF702) 13 74 - -
Gabi4003g00039 202 Pfam Domain of unknown function (DUF702) 78 134 - -
Gabi4003g00039 202 NCBIfam LRP1 C-terminal domain 85 133 IPR006511 -
Gabi4003g00039 202 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 165 IPR007818 GO:0003700|GO:0006355
Gabi4003g00039 202 NCBIfam putative zinc finger domain, LRP1 type 14 56 IPR006510 -
Gabi4003g00039 202 MobiDBLite consensus disorder prediction 53 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00039 Gabi-Chr4003 261680 262571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00039 9 154 C2H2 Transcription Factor Family AT2G21400 44.304 2.07e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi4003g00039 DUF702 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00039 - - gsj:114376985 292.352