Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00034 ATGAAGATACAGTGTGATGTGTGTCACAAAGAGGAAGCCTCTGTGTTCTGTCCTTCAGATGAAGCAGCTCTCTGCCATGGTTGTGATCACACTATCCACCATGCCAACAAGCTCGCAGGCAAACACAAACGTTTCTCTCTGCACCCCCCCACATCCAAAGACACCCCTCTTTGTGATATCTGCCATGAGAGGCATGCATATCTATTTTGCCAAGAAGACAGAACAATACTTTGTAGAGAATGTGACATTCGTATCCATGGAGCCAATGAACATACCCAGAAGCACAATAGGTTTTTTCTCACTGCCGTAAAGCTTTCAGACACAAAATCATTATCATTCACTGGCTCTGAAGTAACAACTTCTCGTTCAAAAGAAAACAGACCAAGTTCATTTTCAAATGAAAATATTAGTTCTTCTCGCATGGTTGAAGTCAACATGGGTTGCGACTCGGGTAATTCAGTTTCAACAAACAGCATTTCTGAATACTTGATTGACACAATTCCCGGTTACTGCATGGAAGACCTTCTTGATGCTTCATTTGCACTTAATGGTTTCTACAAGGATTATGATTACCAATCAGCGTTTCAAGACCAAGATTTTCAAGTTAGCATGTGTTCGTTTCCAATGCAAGCGTGGGTACCACAATCACAACTTAACACTTCGAATCTTACCCAGAATGATTCTTTTGTTGGAGTTAAGGAAGTGCCAAAAGCCAAAGCTGCCGAAGGATACTCGAATTGGAGATATAATAATGGCTACACTTCCCACTCAGTTCCTAGTCCTTCAATTAGTCCTTCTTTTATCAAAAAATGTAGACGCTTTCGTTAA 828 0.4094 MKIQCDVCHKEEASVFCPSDEAALCHGCDHTIHHANKLAGKHKRFSLHPPTSKDTPLCDICHERHAYLFCQEDRTILCRECDIRIHGANEHTQKHNRFFLTAVKLSDTKSLSFTGSEVTTSRSKENRPSSFSNENISSSRMVEVNMGCDSGNSVSTNSISEYLIDTIPGYCMEDLLDASFALNGFYKDYDYQSAFQDQDFQVSMCSFPMQAWVPQSQLNTSNLTQNDSFVGVKEVPKAKAAEGYSNWRYNNGYTSHSVPSPSISPSFIKKCRRFR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00034 275 MobiDBLite consensus disorder prediction 116 135 - -
Gabi4003g00034 275 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi4003g00034 275 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gabi4003g00034 275 CDD Bbox1_BBX-like 5 47 - -
Gabi4003g00034 275 FunFam B-box zinc finger protein 21 1 98 - -
Gabi4003g00034 275 CDD Bbox1_BBX-like 57 100 - -
Gabi4003g00034 275 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 227 - -
Gabi4003g00034 275 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Gabi4003g00034 275 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi4003g00034 275 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gabi4003g00034 275 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00034 Gabi-Chr4003 229208 230762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00034 1 190 C2C2-CO-like Transcription Factor Family AT1G75540 50.476 4.15e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi4003g00034 zf-B_box 2e-06 No_clan