Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4003g00016 ATGGAAGTTGCGGTGGCGAAAGCGTTGAAACCAAGCTTGCAGAAAGACGTTGTTCTCCCGCAAGCAAATTACGAGGAGATTTTGTGCGTGAACACAAACAACGTTGTTGTTGGTGAAGATTTCTCCGTGGACGACCTCCTTGACTTTTCCAACGGCGAATTTCAACATGGCTCTGTTGGAAAAGAAACCGATGACTACGAGGAAGAGGAAGACGAAGAAAAAGACAGCACCTCGGATTCCTCGCAGTCACAGGACCGGATAGAAGACGATAGCAACTCCAATTCCACCGGTTTTTCCGGCGTCGCCGGCGACTCTGACTCCATTTTTGCCGGCGGATTGGCAGTTCCGGCTGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTGGACGATTCTCTCCCGGAGCTCTCGCTATTGTACCCTGTTCGTTCCGAACAAACAAGGGCTTGGGCCGAACCGGAACCTAGACCGGGCTCAGCCAAAACCCCTTCTCTTCCCTCTGCAATTACCAGCAAGCCCAGAACTACCAAGACTAGAAAACCCATCGGTCATGTCTGGTCATTTAAACCCGTGTTCTCGCCGGCGCCGCCTCTCGTGTTCGCCGGCTCTGTCCCGAACAAGGAGTTCTACGAACCGCTGACAAAGAAACAGAAGAAAAAGCCTGAGGCCCAAACCGGTGGGCCCCAGTTTCAGCGACGGTGCAGCCATTGCCATGTGCAAAAAACGCCACAGTGGAGGACCGGTCCACTGGGAGCCAAAACCCTTTGCAACGCTTGTGGGGTTCGATACAAGTCGGGTCGGCTTTTTCCAGAGTACAGACCGGCCTCTAGCCCGACGTTCTCCGGCGATATTCACTCGAACAGCCACCGTAAAGTGTTGGAGATAAGGCGGAGGAAGGAGATGACTGGACCGGAGTCCGGTTCGGACCACACTCAAATGATCCAGAGTAGCTGA 957 0.5371 MEVAVAKALKPSLQKDVVLPQANYEEILCVNTNNVVVGEDFSVDDLLDFSNGEFQHGSVGKETDDYEEEEDEEKDSTSDSSQSQDRIEDDSNSNSTGFSGVAGDSDSIFAGGLAVPADDVADLEWVSHFVDDSLPELSLLYPVRSEQTRAWAEPEPRPGSAKTPSLPSAITSKPRTTKTRKPIGHVWSFKPVFSPAPPLVFAGSVPNKEFYEPLTKKQKKKPEAQTGGPQFQRRCSHCHVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPASSPTFSGDIHSNSHRKVLEIRRRKEMTGPESGSDHTQMIQSS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4003g00016 318 Gene3D - 229 302 IPR013088 GO:0006355|GO:0008270
Gabi4003g00016 318 MobiDBLite consensus disorder prediction 53 99 - -
Gabi4003g00016 318 MobiDBLite consensus disorder prediction 148 180 - -
Gabi4003g00016 318 FunFam GATA transcription factor 224 312 - -
Gabi4003g00016 318 MobiDBLite consensus disorder prediction 298 318 - -
Gabi4003g00016 318 PANTHER GATA TRANSCRIPTION FACTOR 33 307 - -
Gabi4003g00016 318 Pfam GATA zinc finger 235 268 IPR000679 GO:0006355|GO:0043565
Gabi4003g00016 318 CDD ZnF_GATA 234 291 IPR000679 GO:0006355|GO:0043565
Gabi4003g00016 318 SMART GATA_3 229 279 IPR000679 GO:0006355|GO:0043565
Gabi4003g00016 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 232 292 - -
Gabi4003g00016 318 ProSitePatterns GATA-type zinc finger domain. 235 260 IPR000679 GO:0006355|GO:0043565
Gabi4003g00016 318 ProSiteProfiles GATA-type zinc finger domain profile. 229 265 IPR000679 GO:0006355|GO:0043565
Gabi4003g00016 318 PIRSF Txn_fac_GATA_plant 14 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4003g00016 Gabi-Chr4003 73306 75143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4003g00016 40 300 C2C2-Gata Transcription Factor Family AT4G36240 42.222 1.12e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4003g00016 GATA 4.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4003g00016 - - adu:107476627 379.407