Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3997g00003 ATGTCTCAAAAGATGTTTAATTGCGATATCCCTGAGTTCAGCAAGTTTGTGAACCAATGCGAGAAGGTGGAAGAGGTTTATAGTGTCCCGAAGAGTAAGAAATCTTCTGAAGTTAAGGCATCTGAGGCTAATAGAACAACTAGCTCTAATTCATTGACGAATAAAAAGATGAAGGGCAAGAAGTTGAGCATGAACAATCTGTTGGATATGTTCAAGAAGCCCGGGAACCAAAGAAACTTTGTTGATAGAGGACCTCCTCCCAAGTGCAGCGGATGTAGAAAAGAGCACCGAGATCAGTGTTCCTCATGTGAGGTTATTTGCTATAAGTGTGGAAGATCCGACCATTACTCTAGGAAGTGCCCTCAAAATGAAGTGAGGACAATGACAGTTCAGGTTGTTGCCATCCCTACTTCGGTTGTTCCACCTATTGTTGAGTCCCAGACTGCTGGTAGAATATATACCATGGATCGTCAACAATCAGAGAAGGCTCCAAACCTTGTGAAAGGGAATACAGCAGCTGATGAGAGTTCTAATGTTAAGGGCATAATAGGAGCTATTTTAGATAGGAGCACTCGCATTGGTCAAGAGCAAGCAGTGGCTATGAATATGACATTAGAGGATTTTTATCATTACAGCAATCAGAGTTTTGTTCTGCATATAAGGAACTCTCAAGGGGATCCTCTTCTGGCAGCTCTTGCAGCTAGAGATCTTGTTGATAAGCAAAAGGTGCAAGCCATCATTGGACCACAAACATGGGAAGAGACATCTTTAGTGGCTGAAGTCTGCAACCAAAAGAGCATACCCCTCCTTTCTCTAGCAGATGCATCTCCAGAATGGGCAATGGAGAAGTGGAACTTCCTGCTGCAATCCTCACCTAACCAAATTATGCAGATGAAAGCTATAGCTGCAATTGTTAAGACTTGGGAACAGTATGAGGTTAGCATAATTTTAGAAGATGGAGATTCATCATCCACAGAAGTTTTATCTCTGCTCTCTGAAGCTCTCAAAGAAGTCAACGTAGAATTAAGCAATGTTATAGCCTTTCCACCTTTAGTTTCCTCTTCGTTGTCCCAAAAACTTGAGAAGCTAAGAGAAGGGAAATGTAAAGTCTTTATTGTCCATTTATCCTTTCCTTTGGCACTTTACATGTTTGAAACTGCAAAGAAAATGAATATGATGGGGGAAAGTAATGTATGGATTACTACTGATACCATTACAAGTCTTGTTTATTCTTTGAATGCCTCCACTATCTCCAATATGCAAGGGATTATTGGAGTCAAGAGCTACATACCAAATCTATGGCACCAAAATAAGAACTTTTACCATAGATTTCGTAAAAAATTTATCTCAGAGAATTTTTATGAGTTTAATTATGAGCCTGGGATCTTTGCAGCCCTGGCCTATGATGCTACCTGGACTGTGGCTCAAGCAATGAAGGAAACCAACCAAAAAGGGGGTCAACTTTTGCTAGATAAGATTTTGCTTAGTAATTTTACTGGCTTAAGTGGAAAAATTCAGTTCACTGACCATAAAATTGATCCAGCAAGTACTTTTCAGATCATTAATGTGATTGGGAAGAGCTACAGGGAAATTGGGTTCTGGTCAGATGGATTTGGTTTCTCAAAAACTTTTGGCCAAAATGCTTCTTACAGTTCTTTGGTTAAGGAATTAGGAAAAGTGATTAATCCAACATGTGCTAAACGACTGAGAATTGGTGTCCCTTCTACATCAACATTCAAACAGTATGTCAATGTTATTCAAGATCATTCAGAAAATACTACCTCCTTCGAGGGATTTGCTATAGATCTTTTCAAAGAAACAGTAAAAACATTGCCATACCATCTGGAATATGATTTCTTTGCCTTCAATGGGACATATGATGATTTGGTGAAGGAAATTTATCTTAAGAAATATGATGCAGTTGTTGGTGATGTTGCAATAGTGTCCACGCGTTATGAATATGCTGCATTCACTCAGCCCTATACTGATCCAGGAGTGGTGATGATTGTGCCTCTTCAATCAAAAGTAGGCAACAGAGCGTGGTTATTCATGAAGCCTTTCACAAAGCTCATGTGGATTCTTATATTGGTCATCATTGTCTACAATGGCTTTGTTGTATGGATGATCGAAAGAAACCACCGCCCTGAACTTAAGGGCCCTATTCTGCATCAAACAATAACTATGCTGTGGTTGGCTTTCATTTCTCTGTTCTCTATGAATGGAGAAAACTTACATAGCAATTTATCAAGGGTGGCAATGGTGGTGTGGCTTTTTGTGGCTCTAATCATTACACAGACTTACACAGCTAGCCTTGCCAGCATGCTGACTGTTGAAAGGTTTGAACCCACTGTAGACAGCATTCAGCACCTAAGGAACAGCAATGCCATGGTAGGATATGATAGAGGATCCTACTTGAAAAGATATCTCCTGGAAGCATTGGACTTCAATGCTGAAAACATCAAACAATTTGACTCACCTGAAAACTATGTCGAGGCCCTAAGAAAGAAAGAAATAGCAGCTGCCTTTCTTGACATTCCTGAGGCCAAAATTTTCCTTGCAAAGCACTGTAAAGGGTTTGTTCAAGCTGGTCCTACATACAAAATTGGAGGATATGGATATGTATTTCCAAAGGGATCTCCATTGCTTCATGGAATAAACAAAGCCCTTCTAAATATATCAGAAAAGGGCACACTACGTGACCTAGAAAACAGTATGCTTGCATCAGAGGAATGCAAAGACATAGAACCAGGTGCAGAAGCTAGTAGTCTTAGCCCTGGCAGCTTCGTGGTGCTCTTCATCTTAACTGGAGGCACTTCAACCACTGCTCTCTTAATTTACATATTTTCTATGAATTGTTTATGTCATGGACAGAGAACAATTTGGAGTCTAATGATGGCTGTGATTAAACATTGGGGATCTCAAAAGAGACTACTTTCAAGAAGAGTTCACAATGTTACAGAAAGTCCTTTGAACTCTACCAGCATTTCTAATTTGCCAACTTAG 3003 0.3989 MSQKMFNCDIPEFSKFVNQCEKVEEVYSVPKSKKSSEVKASEANRTTSSNSLTNKKMKGKKLSMNNLLDMFKKPGNQRNFVDRGPPPKCSGCRKEHRDQCSSCEVICYKCGRSDHYSRKCPQNEVRTMTVQVVAIPTSVVPPIVESQTAGRIYTMDRQQSEKAPNLVKGNTAADESSNVKGIIGAILDRSTRIGQEQAVAMNMTLEDFYHYSNQSFVLHIRNSQGDPLLAALAARDLVDKQKVQAIIGPQTWEETSLVAEVCNQKSIPLLSLADASPEWAMEKWNFLLQSSPNQIMQMKAIAAIVKTWEQYEVSIILEDGDSSSTEVLSLLSEALKEVNVELSNVIAFPPLVSSSLSQKLEKLREGKCKVFIVHLSFPLALYMFETAKKMNMMGESNVWITTDTITSLVYSLNASTISNMQGIIGVKSYIPNLWHQNKNFYHRFRKKFISENFYEFNYEPGIFAALAYDATWTVAQAMKETNQKGGQLLLDKILLSNFTGLSGKIQFTDHKIDPASTFQIINVIGKSYREIGFWSDGFGFSKTFGQNASYSSLVKELGKVINPTCAKRLRIGVPSTSTFKQYVNVIQDHSENTTSFEGFAIDLFKETVKTLPYHLEYDFFAFNGTYDDLVKEIYLKKYDAVVGDVAIVSTRYEYAAFTQPYTDPGVVMIVPLQSKVGNRAWLFMKPFTKLMWILILVIIVYNGFVVWMIERNHRPELKGPILHQTITMLWLAFISLFSMNGENLHSNLSRVAMVVWLFVALIITQTYTASLASMLTVERFEPTVDSIQHLRNSNAMVGYDRGSYLKRYLLEALDFNAENIKQFDSPENYVEALRKKEIAAAFLDIPEAKIFLAKHCKGFVQAGPTYKIGGYGYVFPKGSPLLHGINKALLNISEKGTLRDLENSMLASEECKDIEPGAEASSLSPGSFVVLFILTGGTSTTALLIYIFSMNCLCHGQRTIWSLMMAVIKHWGSQKRLLSRRVHNVTESPLNSTSISNLPT 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3997g00003 1000 FunFam Glutamate receptor 564 679 - -
Gabi3997g00003 1000 Gene3D - 564 681 - -
Gabi3997g00003 1000 Gene3D - 103 160 - -
Gabi3997g00003 1000 SUPERFAMILY Periplasmic binding protein-like I 182 536 IPR028082 -
Gabi3997g00003 1000 CDD GluR_Plant 567 906 - -
Gabi3997g00003 1000 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Gabi3997g00003 1000 SUPERFAMILY Periplasmic binding protein-like II 566 903 - -
Gabi3997g00003 1000 CDD PBP1_GABAb_receptor_plant 183 544 IPR044440 -
Gabi3997g00003 1000 MobiDBLite consensus disorder prediction 30 56 - -
Gabi3997g00003 1000 SMART GluR_14 568 908 IPR001320 GO:0015276|GO:0016020
Gabi3997g00003 1000 MobiDBLite consensus disorder prediction 41 56 - -
Gabi3997g00003 1000 Pfam Ligand-gated ion channel 904 937 IPR001320 GO:0015276|GO:0016020
Gabi3997g00003 1000 Gene3D - 293 535 - -
Gabi3997g00003 1000 Pfam Zinc knuckle 106 122 IPR001878 GO:0003676|GO:0008270
Gabi3997g00003 1000 Pfam Bacterial extracellular solute-binding proteins, family 3 593 903 IPR001638 -
Gabi3997g00003 1000 Pfam Receptor family ligand binding region 199 524 IPR001828 -
Gabi3997g00003 1000 Gene3D - 869 903 - -
Gabi3997g00003 1000 Gene3D - 682 803 - -
Gabi3997g00003 1000 Gene3D - 823 868 - -
Gabi3997g00003 1000 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 183 951 IPR015683 -
Gabi3997g00003 1000 ProSiteProfiles Zinc finger CCHC-type profile. 107 122 IPR001878 GO:0003676|GO:0008270
Gabi3997g00003 1000 FunFam Glutamate receptor 680 818 - -
Gabi3997g00003 1000 FunFam Glutamate receptor 297 457 - -
Gabi3997g00003 1000 Gene3D - 190 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3997g00003 Gabi-Chr3997 42862 62756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3997g00003 166 948 Ion Channels AT5G27100 31.429 1.13e-131 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3997g00003 - - gmx:100818623 1307.35