Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3996g00001 ATGGCTGAAATTCACTTTCAAACTCACACTCCCACAGGAGCACCCACTATTAGCCCCACCATAAGCAAACCATGCATTAATCCTTCAGAACCTGCTGCAGCTGGTTTCAATTTAATGGTTCTTATAGCAGCCATTGTTTGTGCTTTTGTTTGTGCTCTTGGCCTCAACACAAGGTTACAATGTGTGTTCCAATGTGCTAACCGTGTCCTTACACAGCCTCAGCAATGGATTGTTTCTCGCAGGCTCAATTCTGGCCTCAAGAAGAAAGAAATGGTAGCTTTGCCAACCTCAACTTACAACCATTCTGGTTCTACTCCATCTTCAGCTTCTATTTGTGTCATTTGCTTAGTAGATTTCTCTGATGGTGACAAGTTAAGGTTCCTCCCAAGTTGCAATCACCGTTTCCATGTTGCTTGCATTGATAAGTGGTTGCTTTCTCATTCTTCTTGCCCCACTTGCAGGAACCACCTCAAGTCCAATGATTCATTACACTCTTTAGATATTGTCATATCATAG 516 0.4264 MAEIHFQTHTPTGAPTISPTISKPCINPSEPAAAGFNLMVLIAAIVCAFVCALGLNTRLQCVFQCANRVLTQPQQWIVSRRLNSGLKKKEMVALPTSTYNHSGSTPSSASICVICLVDFSDGDKLRFLPSCNHRFHVACIDKWLLSHSSCPTCRNHLKSNDSLHSLDIVIS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3996g00001 171 PANTHER RING-H2 FINGER PROTEIN ATL78 29 159 IPR044602 GO:0016567|GO:0016740
Gabi3996g00001 171 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Gabi3996g00001 171 SUPERFAMILY RING/U-box 111 161 - -
Gabi3996g00001 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 160 IPR013083 -
Gabi3996g00001 171 CDD RING-H2_EL5-like 111 154 - -
Gabi3996g00001 171 SMART ring_2 112 153 IPR001841 -
Gabi3996g00001 171 Pfam Ring finger domain 112 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3996g00001 Gabi-Chr3996 63761 64276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3996g00001 37 157 C3H Transcription Factor Family AT3G10910 46.512 6.40e-34 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3996g00001 - K19040 gmx:100803003 258.84