Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00113 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAGGATGAAATCCTGAAAGCAGCTGTTATGAAATATGGTAAAAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCTAAGCAATGTAAGGCTCGTTGGTATGAGTGGCTCGATCCTTCCATTAAAAAGACCGAGTGGACAAGAGAAGAGGATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCCACTCAGTGGAGAACGATTGCTCCAATTGTTGGTCGTACCCCTTCTCAGTGCCTTGAACGGTATGAGAAACTACTTGATGCAGCATGTGTAAAGGATGATAACTATGAACCTGGTGATGACCCGAGGAAATTGCGTCCTGGGGAAATTGATCCGAATCCTGAGTCAAAGCCCGCACGCCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGAGCTCGGTTAGCCAACACTAAGGGCAAGAAGGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAACTGAAGGCTGCTGGAATTGATATCAGGCAGCGGAGGCGGAAAAGGAAAGGAATAGACTATAATGCTGAGATTCCCTTCGAGAAGAGGCCTCCTCCAGGGTTTTTTGATGTTGCTGATGAGGATAGACCAGTGGAACAGCCCAAGTTCCCTACTACAATTGAAGAACTTGAGGGAAAAAGAAGGGTTGATCTTGAATCACAGTTAAGAAAGCAAGACATTGCAAAGAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCTATTCTGCACGCCAACAAGCTGAATGACCCAGAAACGGTTAGAAAGAGATCAAAACTGATGCTTCCGCCACCTCAGATTTCTGACCATGAATTGGATGAAATTGCAAAGTTGAGTTCTGCCAGTGACCTTGCAGGAAGTGAGGAATTTGCAGAAGGTAGCAGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCCAGCCAAGGAATGACTCCTCTAAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATCTGGCCAGGTTAAGGGAGTCTCAGACACCATTGTTAGGAGGAGATAACCCAGAGTTACATCCTTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCAGACTCCAAACCCAATGCTGACTCCCTCTGCAACTCCTGGAGGTGCAGGCCTTACTCCCCGAAGTGGTATGACACCGGCAAGGGATGGTATTTCTTTTGGCATGACTCCAAAGGGAACTCCTCTAAGGGATGAGCTACATATTAATGAGGACATGGATATGCATGACAGTGCTAAACTTGAGCTAGCAAGACAAGCTGATAAGAGAAGAGGTTTGCGCTCTGGTTTAGGCAGCCTTCCGCAGCCTAAAAATGAGTACCAGATAGTGATGCAACCAGTTCCAGAAGATGCTGAAGAGTCTGAGCAGAAGATTCAAGAGGATATGTCTGATAGAATAGCTAGAGAAAAGGCAGAAGAAGAGGCACGACAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGAGAACTTCCTAGGCCTCCTACTGCATCATTGGAACTTATAAGAAATTCCTTGATGCGAACTGATGGCGACAAGAGTTCCTTTGTTCCACCGACTTCTATTGAGCAAGCTGATGAAATGATTAGAAGGGAGCTTCTAACTTTGCTGGAGCATGACAATGCTAAGTATCCGCTTGATGAGACTGTGAATAAGGAGAAAAAGAAAGGTGCTAAGCGTACAGCAAATGGGCCTGCAGTCCCTCTGATAGAAGATTTTCAGGAAGACGAGATGAATGATGCTGATCAGTTGATAAAGGAGGAGGCCCAGTATCTTCGTGTGGCAATGGGGCATGAAAGTGAATCCCTTGATGAATTTGTTGAAGCACATACGACTTGCATTAATGATCTGATGTACTTTGCCACCCGTAATGCCTATGGTCTATCAAGTGTTGCTGGTAACATGGAGAAGGTAGAAGCTTTGCAGAATGAATTTGAGAATGTGAGAAGCAAGTTGGATGATGGTAAGGAGAAGATAGTACGCCTTGAGAAGAAAGTGACAGTACTTACACAAGGCTATGAGACAAGGTCAAAAAAAAGTCTTTGGCCGCAAATTGAGGCCACTTTCAAGCAGATGGACATAGCTGCAACAGAATCAGAGTGTTTCCAAGCTTTACAGAAGCAGGAGCAATTGGCAGCATCACACAGGATAAACAATATGTGGGCTGAAGTACAGAAGCAAAAGGAACTTGAGAAAACTTTACAAAAGAGGTATGGGGATCTCATGGCAGAACTAGAAAGGACACAAAATGTCATGGACCAGTTCAGGGTACAAGCTCAACAGCAAGAAGAAATTGAAGCAAACAATCATGCACTTGAGCTTACCGAGGCCACAACTGATGAAATTAATGTGCCAGGCACAGAGATTTGTGAAGCTGTACCTGTCTCCGTTGACCATGGAAGTGCTACATCGGTTGGTCCATGTCATGATGGAACGGCCGACCAGCAAGTAGACATTGTACAAGACCAGGCCAATTCTATCTCCAAAAGCGATATGGATGTGGATTCTTGTAAAGAGCAAATGACACACGACACTGATGTTGAATTGCCTGATGCACCTGTTGCTGAGGATGGCAGTGCTAAAGTGGTAGAAGGTAACAACGTTGACAGTTATATTGAAAACAGAGAGGCCACACTAGATATGAGTGCTGCAGTGGAAACAAGTAGTATCGAGGGAACCGGGGAGGATAGAGATGTTGAGAAACCAGATGAGGTCGTGGAAGCGGTAAACCAATATGATAAATAG 2898 0.4489 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDIRQRRRKRKGIDYNAEIPFEKRPPPGFFDVADEDRPVEQPKFPTTIEELEGKRRVDLESQLRKQDIAKNKIAQRQDAPSAILHANKLNDPETVRKRSKLMLPPPQISDHELDEIAKLSSASDLAGSEEFAEGSSATRALLANYAQTPSQGMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTPKKKEIQTPNPMLTPSATPGGAGLTPRSGMTPARDGISFGMTPKGTPLRDELHINEDMDMHDSAKLELARQADKRRGLRSGLGSLPQPKNEYQIVMQPVPEDAEESEQKIQEDMSDRIAREKAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRTDGDKSSFVPPTSIEQADEMIRRELLTLLEHDNAKYPLDETVNKEKKKGAKRTANGPAVPLIEDFQEDEMNDADQLIKEEAQYLRVAMGHESESLDEFVEAHTTCINDLMYFATRNAYGLSSVAGNMEKVEALQNEFENVRSKLDDGKEKIVRLEKKVTVLTQGYETRSKKSLWPQIEATFKQMDIAATESECFQALQKQEQLAASHRINNMWAEVQKQKELEKTLQKRYGDLMAELERTQNVMDQFRVQAQQQEEIEANNHALELTEATTDEINVPGTEICEAVPVSVDHGSATSVGPCHDGTADQQVDIVQDQANSISKSDMDVDSCKEQMTHDTDVELPDAPVAEDGSAKVVEGNNVDSYIENREATLDMSAAVETSSIEGTGEDRDVEKPDEVVEAVNQYDK 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 379 427 - -
Gabi3995g00113 965 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Gabi3995g00113 965 Coils Coil 167 187 - -
Gabi3995g00113 965 SMART sant 58 105 IPR001005 -
Gabi3995g00113 965 SMART sant 6 55 IPR001005 -
Gabi3995g00113 965 Coils Coil 796 816 - -
Gabi3995g00113 965 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Gabi3995g00113 965 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Gabi3995g00113 965 Pfam Myb-like DNA-binding domain 10 70 - -
Gabi3995g00113 965 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 213 238 - -
Gabi3995g00113 965 FunFam CDC5 cell division cycle 5-like 60 120 - -
Gabi3995g00113 965 Gene3D - 59 114 - -
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 222 238 - -
Gabi3995g00113 965 CDD SANT_CDC5_II 55 106 IPR047240 -
Gabi3995g00113 965 FunFam CDC5 cell division cycle 5-like 5 59 - -
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 399 413 - -
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 931 965 - -
Gabi3995g00113 965 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Gabi3995g00113 965 Gene3D - 5 58 - -
Gabi3995g00113 965 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 110 150 - -
Gabi3995g00113 965 Coils Coil 689 716 - -
Gabi3995g00113 965 MobiDBLite consensus disorder prediction 942 965 - -
Gabi3995g00113 965 CDD SANT 10 53 IPR001005 -
Gabi3995g00113 965 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00113 Gabi-Chr3995 649869 655279 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00113 1 835 MYB-Related Transcription Factor Family AT1G09770 75.328 0.0 1239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3995g00113 Myb_Cef 6.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00113 K12860 - gmx:100801352 1519.98