Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00112 ATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAGGATGAAATCCCGAAAGCAGCTGTTATGAAATATGGTAAAAACCAGTGGGCTCGAATCTCTTCGCTCCTTGTTCGCAAATCTGCTAAGCAATGTAAGGCTCGTTGGTATGAGTGGCTCGATCCTTCCATTAAAAAGACCGAGTGGACAAGAGAAGAGGATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCCACTCAGTGGAGAACGATTGCTCCAATTGTTGGTCGTACCCCTTCTCAGTGCCTTGAACGGTATGAGAAACTACTTGATGCAGCATGTGTAAAGGATGATAACTATGAACCCGGTGATGACCCGAGGAAATTGCGTCCTGGGGAAATTGATCCGAATCCTGAGTCAAAGCCCGCACGCCCGGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCCGAAGCACGAGCTCGGTTAGCCAATACTAAGGGCAAGAAGGCGAAAGGTAGAAGCTTTGCAGAATGA 522 0.4693 MRIMIKGGVWKNTEDEIPKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKGRSFAE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00112 173 FunFam CDC5 cell division cycle 5-like 60 120 - -
Gabi3995g00112 173 CDD SANT_CDC5_II 55 106 IPR047240 -
Gabi3995g00112 173 Gene3D - 57 113 - -
Gabi3995g00112 173 MobiDBLite consensus disorder prediction 110 173 - -
Gabi3995g00112 173 SMART sant 6 55 IPR001005 -
Gabi3995g00112 173 SMART sant 58 105 IPR001005 -
Gabi3995g00112 173 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Gabi3995g00112 173 SUPERFAMILY Homeodomain-like 5 53 IPR009057 -
Gabi3995g00112 173 Gene3D - 5 56 - -
Gabi3995g00112 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 53 IPR017930 -
Gabi3995g00112 173 SUPERFAMILY Homeodomain-like 37 106 IPR009057 -
Gabi3995g00112 173 Pfam Myb-like DNA-binding domain 10 70 - -
Gabi3995g00112 173 CDD SANT 10 53 IPR001005 -
Gabi3995g00112 173 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Gabi3995g00112 173 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 107 IPR017930 -
Gabi3995g00112 173 FunFam CDC5 cell division cycle 5-like 5 59 - -
Gabi3995g00112 173 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 167 IPR047242 GO:0000398|GO:0000974
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00112 Gabi-Chr3995 642081 647909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00112 1 163 MYB-Related Transcription Factor Family AT1G09770 94.479 1.52e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3995g00112 Myb_DNA-bind_6 1.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00112 K12860 - qsa:O6P43_007684 346.665