Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00109 ATGGCACCTACTCCTTGTTGTGAGAAGATGGGATTGAAGAAGGGACCATGGACTGCTGAAGAAGATCATATATTGATTTCTCATATTCAACGATACGGCCATGAAAACTGGCGTGCGCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGCAAGAGTTGTAGGCTTCGTTGGATAAATTACTTGAGACCAGATATTAAACGAGGGAAATTCAGCAAGGAAGAAGAAGATACCATCCTAAAGCTACATGAAATTCTTGGAAATAGATGGTCTGCTATTGCTGCAAGATTACCAGGAAGAACAGACAACGAAATAAAGAATTTTTGGCATACCCATTTGAAGAAGAGGATGAAGAAAATTAGTGAGGTGCAAAATGGCAATAGCTCCTCATATATCTTGCAAGAGGGACAAGCAAATAGTTCGGGGACTCTAATGACCATGCCACCAGGAGTAGAGGAGGATGCTGGCAAAGTAATGATTGCCAATTATGGTATACCCTCAAGGATGAATCCATCAGGATTTTACAGTGCAGTCTCTCGTGATACTTCAGGAGAAACCATAGGCAATAATGGTTCTAGTCAGATCAGTGATGAAATGGAATTTTGGTACAATGTTTTCATCAAATCAGGGCAGCCATAG 636 0.4104 MAPTPCCEKMGLKKGPWTAEEDHILISHIQRYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSKEEEDTILKLHEILGNRWSAIAARLPGRTDNEIKNFWHTHLKKRMKKISEVQNGNSSSYILQEGQANSSGTLMTMPPGVEEDAGKVMIANYGIPSRMNPSGFYSAVSRDTSGETIGNNGSSQISDEMEFWYNVFIKSGQP 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00109 211 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3995g00109 211 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3995g00109 211 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3995g00109 211 CDD SANT 69 112 IPR001005 -
Gabi3995g00109 211 Gene3D - 13 66 - -
Gabi3995g00109 211 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gabi3995g00109 211 CDD SANT 16 61 IPR001005 -
Gabi3995g00109 211 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3995g00109 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 128 - -
Gabi3995g00109 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3995g00109 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3995g00109 211 FunFam MYB-related transcription factor 13 66 - -
Gabi3995g00109 211 FunFam MYB transcription factor 69 116 - -
Gabi3995g00109 211 SMART sant 66 114 IPR001005 -
Gabi3995g00109 211 SMART sant 13 63 IPR001005 -
Gabi3995g00109 211 Gene3D - 68 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00109 Gabi-Chr3995 628821 629844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00109 1 205 MYB Transcription Factor Family AT2G31180 49.153 4.14e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3995g00109 Myb_DNA-binding 4.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00109 K09422 - gmx:102663040 320.087