Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00097 ATGTCTTCATCTTCTCCTGTTCTTCCCACTCCCATGGAAAACAAGTATATGAAACCTCCTGATTCTTGTCAGCTTTCACCGCCTGTCAGAGATCTGACTGCAAATCCTGCCTCACTGCAAGCTACATCATCAAATTTGATTAGAAGCGTTGGGCAGATGTTTTCATCCCCTGCTGAATGTCCTGGTGACATCCCTTTTTCCCCTGCTTCACAGCATGATAGGCAATATCGAGATTCTCCCTTCATTTCTCAGACATTAGGTGACAATGCGCCTTCTGAAATACATTCAACAACATACATTTCTCATCCTCAAGAAAGGGATGATATTTCCTGGGGTCCAGATCCGTATCAGGATATTCTTAGTTTTCCTGAAAATGTTTCTGTCCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGATGACAATGTCAAAAAATCTGATTTTGGGGAGTGGGTTGATCAGTTAATGTCTATTGATGATTCTCTTCAGCCAAATTGGAGTCAGCTTCTTGATGACAATGTAGCAGAACCAAAACCAAAGGCGATCCAGGTTCCCCAGCAACAGCTTATACCATCTGGAGAAGTTAATGGTCTTCCTAATTCAGCATCGACTGCACCGCAAACTAAACCTAGAATGCGTTGGACTCCAGAACTTCACGAGGCCTTTGTAGAAGCAGTCAATCAGCTTGGTGGTAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAATCTGATGAAAGTTGACGGCCTTACCATCTATCATGTAAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAGGGAACTTCTGAGAAAAAGATAACTTCAATCGAAGAAATGAAATCTCTGGACTTGAAAACGAGTAAGGGGATCACTGAAGCATTACGGTTGCAGATGGAACTCCAGAAGCGGCTTCATGAACAACTTGAGATTCAAAGAACGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTGCAGATGATATTTGAGAAGCAGAGAGAGATGGGTGACAGCAAGGTTAAGGGCTCCTCTTCCCCTTTGGACAAGCTTTCTGCTGCACTATCTGACACGGTGCTGCCTGCAGACAATCTAGAAACCTCAAATGAGGAACATGACAAATTTGGAAGCAACAGTAGCCTTCCGAAAGTCATGCCTGAAGAAAGTTCCCAGGAGGATGCAAGCAGAAAGCATATGGTAGGTGAAGCTGATGTTATGGATAAACAAGAGGCGGTAGAAGATCAATATGCTGCACCACCCACTAAACGGGTGAAGTGTTGA 1302 0.4363 MSSSSPVLPTPMENKYMKPPDSCQLSPPVRDLTANPASLQATSSNLIRSVGQMFSSPAECPGDIPFSPASQHDRQYRDSPFISQTLGDNAPSEIHSTTYISHPQERDDISWGPDPYQDILSFPENVSVQHDQVENSACYMNDDNVKKSDFGEWVDQLMSIDDSLQPNWSQLLDDNVAEPKPKAIQVPQQQLIPSGEVNGLPNSASTAPQTKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVDGLTIYHVKSHLQKYRTARYKPESPEGTSEKKITSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRTLQIQIENQGKHLQMIFEKQREMGDSKVKGSSSPLDKLSAALSDTVLPADNLETSNEEHDKFGSNSSLPKVMPEESSQEDASRKHMVGEADVMDKQEAVEDQYAAPPTKRVKC 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00097 433 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 265 IPR006447 GO:0003677
Gabi3995g00097 433 MobiDBLite consensus disorder prediction 53 74 - -
Gabi3995g00097 433 MobiDBLite consensus disorder prediction 396 418 - -
Gabi3995g00097 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 205 403 IPR044848 GO:0003700
Gabi3995g00097 433 MobiDBLite consensus disorder prediction 1 34 - -
Gabi3995g00097 433 Coils Coil 299 319 - -
Gabi3995g00097 433 Gene3D - 210 269 - -
Gabi3995g00097 433 MobiDBLite consensus disorder prediction 368 433 - -
Gabi3995g00097 433 FunFam Myb family transcription factor 210 268 - -
Gabi3995g00097 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 268 IPR017930 -
Gabi3995g00097 433 Pfam Myb-like DNA-binding domain 213 264 IPR001005 -
Gabi3995g00097 433 SUPERFAMILY Homeodomain-like 209 265 IPR009057 -
Gabi3995g00097 433 Pfam MYB-CC type transfactor, LHEQLE motif 298 342 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00097 Gabi-Chr3995 578416 584053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00097 49 353 G2-like Transcription Factor Family AT3G04450 46.061 8.31e-80 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gabi3995g00097 Myb_DNA-binding 1.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00097 - - gmx:100803267 611.298