Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00094 ATGGCCCCCAATCCAAGAGTTATAAAGGCCTTTAGGGCTACGAGGGCCTTAGGAATTTCTGACGAAGAGGTGAAGCCCGTGTTGAAAAAGTTGTTAAAAGTTTATGATAAAAGCTGGGAGCTTATTGAAGATGACAATTATCGCACACTCGTAGATGCATACTTCGAGTATAAGGAAGATAAGGGAGGTGAAGGGAAGAGAAAAGCTCCTTTCAGTTGTCATGGTGGAGAGAGACCCATACAGAAACTGCACTTGGTAGATGAAGTTGACCAGGTTCCAACAACCATGGACAACTCAAGCCAAATGTTATATGCAGAAGACAATAAAACACCACCGAAGACTTCTCAACAGGAAATCACTGAGCCATCTCAAACATTAGTGCAAGATATTAAGCCTGTAACTAGTTCAGATGCATCACATAAAATGTTGAGTGAGGTAGAAAATATCTCACTTTTTCCTTGCGTGGCAGCTAAAGATAGAAAATCATATCCCCAGAAAGTATCATCCACAGGGCATTCTGGTCATTATGAGAAAGAGATTGTGAAGCCAAGAACCAAGAAAGGCTTATCTGAGGCTTCAAATGGAAATCATTGTATCAAATTTCTGTCAACTGAGGATCAGGATATGCATAGTAAAGATGCTACATCAGCATGCAACAACACCACCACAACTTGTAAGGGGAACATTATTATTGCTTCTTCACATCTAGGAGAAGTTAAAATATCTTTAAATTGTGACTATGCCTTGGGACAACCAAACTTCTGTATTCCTAATTTGGATTTGCAAGCTCTTACTAAAGATGAAAGGGATTCCTTTCATTTTATCAGTGACATAGCAAAAGGTTCAGAAAAGGTGAAAATATCATTAATAGATGAAATTGGTGGTGAGGATTTGCCAAAATTTAATTACACACCACATAATATAATATACCAAAGTGCTAATGTAAATATTTCATTGGCTCGTATTGCGGATGAGGGTTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTTATCATTGCCTTGTGCATGTGCTCAGGAAACTGGGGGAGAGTTTGCTTACACTCCTCAAGGTTTGTTGAAAGAAGAATTTCTAACATCTTGTATGTCTATGAAGGATGATCCTCAAGATCATCATTTTGTGTACTGTCAAGAGTGTCCATTGGAGAAGTCCAAACGATGCAAGGGACATCTGGTTAGGAAATTTATAAAAGAATGTTGGAGGAAATGCGGATGTGACATGCGTTGTGGAAATCGTATAGTGCAACGAGGTTTAACATGCAAATTGCAGGTGTTCTTAACTTGCGATGGTAAGGGCTGGGGCCTTAGAACACTAGAAGATTTGCCCAAGGGAACTTTCGTATGTGAATATGCAGGAGAAATATTAACCAATACAGAGTTAGACGAAAGGAATGTGCACAATAGTGGCAATGATAGACATACGTATCCTGTAACTCTTGATGCAGATTGGGGTTCAGAAGGGGTGTTAAAGGATGAGGAGGCACTATGTTTAGATGCAACATGTAATGGAAACGTTGCAAGATTTATCAATCATAGATGCTCTGATGCAAATCTCATAGACATTCCTGTCGAAGTGGAGACTCCTGATCACCACTATTATCATCTTGCCTTCTTTACCAACAGGAAAGTGAGTGCGTATGAGGAGCTGTCATGGGATTATGGTATCGATTTTGATGACCATGACCATCCAATTAAAGCATTTCGATGTTGTTGTGGAAGCTCCTTCTGCTGTGATAAGAAACAAAAAGGGAAAAGAAAAATAGAATCCGGTTCATATAACAAGAGAAATGTCTGA 1815 0.395 MAPNPRVIKAFRATRALGISDEEVKPVLKKLLKVYDKSWELIEDDNYRTLVDAYFEYKEDKGGEGKRKAPFSCHGGERPIQKLHLVDEVDQVPTTMDNSSQMLYAEDNKTPPKTSQQEITEPSQTLVQDIKPVTSSDASHKMLSEVENISLFPCVAAKDRKSYPQKVSSTGHSGHYEKEIVKPRTKKGLSEASNGNHCIKFLSTEDQDMHSKDATSACNNTTTTCKGNIIIASSHLGEVKISLNCDYALGQPNFCIPNLDLQALTKDERDSFHFISDIAKGSEKVKISLIDEIGGEDLPKFNYTPHNIIYQSANVNISLARIADEGCCSDCSGDCLSLSLPCACAQETGGEFAYTPQGLLKEEFLTSCMSMKDDPQDHHFVYCQECPLEKSKRCKGHLVRKFIKECWRKCGCDMRCGNRIVQRGLTCKLQVFLTCDGKGWGLRTLEDLPKGTFVCEYAGEILTNTELDERNVHNSGNDRHTYPVTLDADWGSEGVLKDEEALCLDATCNGNVARFINHRCSDANLIDIPVEVETPDHHYYHLAFFTNRKVSAYEELSWDYGIDFDDHDHPIKAFRCCCGSSFCCDKKQKGKRKIESGSYNKRNV 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00094 604 Pfam Pre-SET motif 278 419 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3995g00094 604 FunFam SET-domain containing protein lysine methyltransferase family protein 278 586 - -
Gabi3995g00094 604 ProSiteProfiles SET domain profile. 427 561 IPR001214 GO:0005515
Gabi3995g00094 604 Gene3D SET domain 253 572 IPR046341 -
Gabi3995g00094 604 ProSiteProfiles Pre-SET domain profile. 327 424 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3995g00094 604 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 -
Gabi3995g00094 604 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 593 - -
Gabi3995g00094 604 SMART preset_2 275 411 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi3995g00094 604 CDD SET_SETDB-like 299 561 - -
Gabi3995g00094 604 SUPERFAMILY SET domain 285 583 IPR046341 -
Gabi3995g00094 604 Pfam SET domain 439 561 IPR001214 GO:0005515
Gabi3995g00094 604 Gene3D - 1 60 IPR043017 -
Gabi3995g00094 604 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 599 IPR025776 -
Gabi3995g00094 604 SMART set_7 427 567 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00094 Gabi-Chr3995 565174 573424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00094 403 561 C2H2 Transcription Factor Family AT2G23740 41.875 3.34e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi3995g00094 Pre-SET 6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00094 - - gmx:100802372 751.125