Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00085 ATGGAAGCTCCTGCTGGTGGAGTGGATGATATGACTAAGCTGTCCTATTTGCATGAACCTGGAGTCCTGCAGAACTTAAAAAGTAGATATGAATTGAATGAAATATATACTTATACTGGAAACATTCTGATTGCAATAAATCCATTCCAAAGACTTCCTCATATTTATGATTTGCACATGATGCAACAATACAAGGGCGCACCATTTGGAGAGTTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATACAGGGCAATGGTTAATGAAAGAAAAAGCAATTCAATTCTGGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTCATGCGATACCTTGCTTTCTTAGGTGGAAGGGCTGTCACAGAAGGACGAACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCTTTTGGCAATGCTAAAACTGTCAGGAATAACAATTCCAGTCGTTTTGGTAAATTTGTTGAGATCCAATTTGATAAGAGTGGAAGAATCTCAGGAGCAGCCATTCGAACATACCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAACGCAACTACCACTGTTTTTATCTTCTTTGTGCTGCACCACAAGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAAGCATTTCATTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATTCTCGTGAGTATCTTGCCACCAGGAGAGCTATGGATATTGTTGGAATAAGCCAAAAAGAGCAGGAAGCAATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGATTTTTCCAAAGGAAAGGAAGTTGATTCATCAATTCCAAAAGATGACAAAGCCAAATTCCACTTAAAAACAACTGCTGAGCTCCTCATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAGGAAGTTATAAAACGGAGCCTTGATCCCCAGAGTGCAGTAATCAGCAGAGATGGCTTGGCAAAAACAATTTATTCTAGGCTTTTTGACTGGTTGGTGGACAAGATTAATAATTCAATCGGGCAAGACTCCAATTCTAAATCTTTGATCGGGGTCCTTGATATCTATGGTTTTGAAAGCTTTAAATCTAACAGTTTTGAGCAGTTTTGCATTAATTTCACAAATGAGAAGTTACAGCAACATTTCAACCAGCACGTGTTTAAAATGGAACAAGAAGAATATACGAAGGAGCAGATTGATTGGAGCTACATTGAATTTGTTGACAACAAAGACGTTTTGGACCTTATTGAAAAGAAACCGGGAGGAATAGTAGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACTCATGAAACTTTTTCGAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAACCTAAATTGTCTCGAACAGATTTCACTATTTCTCATTATGCTGGCGAGGTGCAGTACCAGTCTGACCACTTTTTAGACAAAAACAAGGATTATGTGGTTCCTGAACATCAAGATTTATTGAGTGCTTCCAAATGTCCTTTTGTAGCAGGGCTTTTTCCACAACTTCCAGAAGAGACATCAAAATCTTCAAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTGCAACTACAGCAACTAATGGAGACACTAAACTCTACAGAGCCTCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAACCTGCAATTTTTGAGAATGTTAATATTATGCAACAACTTCGCTGTGGTGGTGTTTTAGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGCCGTGCTTTCTTTGAGTTTATAAACCGATTTTCTCTCCTTGCTCCAGAGGTCGCAGAAGCAAACCATGATGAGAAGACTGTTTGCCAAAAGATTCTGGAAAAGATAGGGCTTAAAGGATATCAGATCGGAAAAACAAAGGTATTCCTAAGAGCAGGTCAGATGGCTGAACTAGATGCACGAAGAGCTCTAGTACTCAGTAATGCAGCAAAAACTATCCAACGGCGTGTACGAACCCACCAGGCTCGTAAACATTATCTTGCACTGCGAAAGAAGACCGTATATGTGCAGTCTCTATGGAGAGGAAGACTTGCATGCAAACTTTATCATAATATGAGAAGGGAGGCTGCTGCTGTGAAAATTCAGAAGAACTTACGCAGATATGAAGCTTGGAAAGCCTATACTAAACTCCAAGCATCAGTACTTACTTTGCAAACAGCTTTAAGGGCAGTCTCTGCCCTTAAGGAGTTCAAACTTAGGAAACAGACTAAAGCTTCCATTATTATTCAGGCTCGGTGGCGATGCCACAAAGCTGCTTCATATTATAAGAGGCTCAAGAAAGGTTCAATAGTTGCACAATGCCGATGGAGGGGGCGTGTGGGCAGGAAAGAACTTAGGAAACTGAAAATGGCTGCAAGAGAAACTGGCGCGCTTAAAGAAGCAAAGGATAAACTTGAAAAACGAGTGGAGGAACTCACTTGGCGTCTCCAACTTGAAAAAAGTTTAAGGACTAACCTAGAAGAATCCAAAGCACAAGAGATTGCAAAACTGCAGAATTCACTACAGGAGATGCAGAACAAAGTTGAAGAAACCAATGCTATGCTTGTAAAGGAGCGAGAGAATGCAAAGAAAGTTATTGAAGAAGCACCTCCGGTTATTAAAGAAACTCAGGTTATTGTTGAAGACACTCAGAAGATTGAATCACTAACCGCAGAAGTTGAGAGCTTAAAGACTTCTCTTGAGTCAGAGAAACAGAAAGCTGGTGACTTTGAAGGGAAATACAATGAAGCCAAAGCTTGTAGTGAAGAAAAGAGTGAAAAATTAGAAGACACAGAGAAGAAGGTTCGTCAGCTCCAAGAATCATTAACCAGGCTAGAAGAGAAGATTAATAATTTAGAATCAGAGAATCAGGTTCTACGTCAACAAGCTGTGTCTATGGCACCTAATAAGTTCCTCTCAGGACGCTCAAGATCAATTATGCAGGTACTCCTTGGAAGCGGACATATTGGAGTGGAAGCAAAGACACCGTTGGACATGCATAGCTCATCAATGAACCACAGGGAGTTCTCCGAAGTGGAGGATAAACCGCAGAAGTCACTAAATGAGAAACAACAGGAGAACCAAGAGTTGCTCATTAGATGTATTGCACAACATCTAGGCTTTGCTGGGAATAGACCAATTGCTGCCTGTATCATATACAAATGCCTCTTGCATTGGAGATCGTTTGAAGTTGAGCGTACTAGCGTTTTTGATCGTATAATCCAAACTATTGGCCATGCAATTGAGAAAACCCAGGATAACAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGCTACTGCAGCGCACACTTAAGGCAAGTGGTGCTGCTGGAATGGCTCCTCAACGCCATCGTCGGTCTTCATCAGCAACACTGTTTGGGAGGATGACACAAAGTTTCCGTGGAGCTCCAACGGGAGTTAATATTTCCCTAATTAATGGTAGCATGAATGGTGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCAGCTCTACTTTTCAAACAGCAGCTTACAGCTTATGTCGAAAAGATATATGGAATGATTCGAGATAACTTAAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCTCCCAGAACTTCCAGAGCGAGCTTGGTTAAGGGATCATCACGTTCAGTTGCAAACACTGAAGCCCAGAAAGCTTTGATTGCTCACTGGCAGGGGATAGTTAAGAGCCTTGGGAACTTCTTAAACACTTTGAAAGCAAATCATGTTCCCCCATTTTTGGTTCGTAAGGTGTTCACTCAAATTTTTTCTTTCATCAATGTTCAACTTTTCAATAGTCTTCTTTTAAGACGGGAGTGCTGCTCATTTAGTAATGGAGAGTATGTGAAAGCTGGTTTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCAGCCTGGGATGAGCTCAAACATATTAGACAGGCTATTGGATTTCTGGTCATACATCAGAAACCAAAGAAAACACTCGATGAAATAAGTCATGACCTGTGCCCAGTCCTCAGTATACAGCAGCTATATCGGATTAGCACCATGTACTGGGATGACAAGTATGGCACACATAGCGTGTCCCCTGATGTCATATCCAATATGAGAGTGTTGATGACTGAAGATTCAAATAATGCAGTTAGTAATTCCTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCAAAGTCAAAGGAACAGATAGATATCTCTGATATCGAGCCCCCACCATTAATTCGTGAGAACTCTGGCTTTAGTTTCTTATTGCCACGCTCAGACTGA 4431 0.4058 MEAPAGGVDDMTKLSYLHEPGVLQNLKSRYELNEIYTYTGNILIAINPFQRLPHIYDLHMMQQYKGAPFGELSPHVFAVADVAYRAMVNERKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPKAFHYLNQSKCYELADVSDSREYLATRRAMDIVGISQKEQEAIFRVVAAILHIGNIDFSKGKEVDSSIPKDDKAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAVISRDGLAKTIYSRLFDWLVDKINNSIGQDSNSKSLIGVLDIYGFESFKSNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEQIDWSYIEFVDNKDVLDLIEKKPGGIVALLDEACMFPKSTHETFSNKLYQTFKNHKRFIKPKLSRTDFTISHYAGEVQYQSDHFLDKNKDYVVPEHQDLLSASKCPFVAGLFPQLPEETSKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFSLLAPEVAEANHDEKTVCQKILEKIGLKGYQIGKTKVFLRAGQMAELDARRALVLSNAAKTIQRRVRTHQARKHYLALRKKTVYVQSLWRGRLACKLYHNMRREAAAVKIQKNLRRYEAWKAYTKLQASVLTLQTALRAVSALKEFKLRKQTKASIIIQARWRCHKAASYYKRLKKGSIVAQCRWRGRVGRKELRKLKMAARETGALKEAKDKLEKRVEELTWRLQLEKSLRTNLEESKAQEIAKLQNSLQEMQNKVEETNAMLVKERENAKKVIEEAPPVIKETQVIVEDTQKIESLTAEVESLKTSLESEKQKAGDFEGKYNEAKACSEEKSEKLEDTEKKVRQLQESLTRLEEKINNLESENQVLRQQAVSMAPNKFLSGRSRSIMQVLLGSGHIGVEAKTPLDMHSSSMNHREFSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIEKTQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRHRRSSSATLFGRMTQSFRGAPTGVNISLINGSMNGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQKALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSKEQIDISDIEPPPLIRENSGFSFLLPRSD 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00085 1476 CDD MyosinXI_CBD 1055 1442 IPR037975 GO:0007015
Gabi3995g00085 1476 CDD MYSc_Myo11 20 664 IPR036018 -
Gabi3995g00085 1476 ProSiteProfiles IQ motif profile. 775 802 IPR000048 GO:0005515
Gabi3995g00085 1476 ProSiteProfiles IQ motif profile. 727 756 IPR000048 GO:0005515
Gabi3995g00085 1476 FunFam Myosin 2 256 373 - -
Gabi3995g00085 1476 SMART MYSc_2a 1 677 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 FunFam Myosin heavy chain 196 251 - -
Gabi3995g00085 1476 FunFam unconventional myosin-Va 777 825 - -
Gabi3995g00085 1476 FunFam Class V myosin 383 521 - -
Gabi3995g00085 1476 Pfam IQ calmodulin-binding motif 776 796 IPR000048 GO:0005515
Gabi3995g00085 1476 Pfam IQ calmodulin-binding motif 681 699 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 701 723 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 726 748 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 749 771 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 797 819 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 678 700 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART iq_5 774 796 IPR000048 GO:0005515
Gabi3995g00085 1476 Gene3D - 611 677 - -
Gabi3995g00085 1476 Pfam Myosin head (motor domain) 8 664 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 Coils Coil 912 939 - -
Gabi3995g00085 1476 Gene3D - 196 254 - -
Gabi3995g00085 1476 Coils Coil 947 995 - -
Gabi3995g00085 1476 FunFam unconventional myosin-Va 681 729 - -
Gabi3995g00085 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 729 IPR027417 -
Gabi3995g00085 1476 Gene3D - 383 567 - -
Gabi3995g00085 1476 ProSiteProfiles IQ motif profile. 679 706 IPR000048 GO:0005515
Gabi3995g00085 1476 SMART DIL_2 1294 1401 IPR002710 -
Gabi3995g00085 1476 ProSiteProfiles Dilute domain profile. 1104 1419 IPR002710 -
Gabi3995g00085 1476 ProSiteProfiles Myosin motor domain profile. 6 676 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 PRINTS Myosin heavy chain signature 373 401 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 PRINTS Myosin heavy chain signature 36 55 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 PRINTS Myosin heavy chain signature 93 118 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 PRINTS Myosin heavy chain signature 140 167 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 PRINTS Myosin heavy chain signature 426 454 IPR001609 GO:0003774|GO:0005524|GO:0016459
Gabi3995g00085 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 827 IPR027417 -
Gabi3995g00085 1476 Gene3D Kinesin motor domain 9 606 IPR036961 -
Gabi3995g00085 1476 ProSiteProfiles IQ motif profile. 702 731 IPR000048 GO:0005515
Gabi3995g00085 1476 PANTHER MYOSIN 7 1407 - -
Gabi3995g00085 1476 Coils Coil 821 855 - -
Gabi3995g00085 1476 Gene3D Myosin VI head, motor domain, U50 subdomain 256 545 - -
Gabi3995g00085 1476 Gene3D - 777 826 - -
Gabi3995g00085 1476 Gene3D - 679 728 - -
Gabi3995g00085 1476 Gene3D - 729 776 - -
Gabi3995g00085 1476 Coils Coil 860 901 - -
Gabi3995g00085 1476 Pfam DIL domain 1295 1398 IPR002710 -
Gabi3995g00085 1476 ProSiteProfiles IQ motif profile. 798 827 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00085 Gabi-Chr3995 508861 523741 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00085 1 1476 Myosins gene family AT1G54560 83.875 0.0 2605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00085 K10357 - gmx:100816792 2637.45