Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00071 ATGGCTCCCGATGCTTCCGACGCACTTGCAGTGAGACAGAAAGTTCAACTATTTCTCAACGCTGCTTGTTCCGGCAATCTTGATCTCCTAAAGAAATTGGCGGGGCAGCTAGATGAGGGAAAGGATTTACCTAAGACAGTGGAAGCAATAAAGGACGCAAACAAGCGAGGAGCACTTCATTTTGCCGCTCGAGAAGGCCAAACTGAGGTTTGCAACTACCTCTTAGAGGAACTCAACCTTCATGTAGATTCTAAAGATGACGATGGCGAGACTGCTCTCATTCATGCTGCTCGTCAGGGACACACAGCCACTGCTAAATATCTTATTGACCGTGCTGCTGATCCTACTATAGCTAGCAATTTAGGGGCTACGGCCTTGCACCATTCTGCAGGGATAGGAGATACTGAGCTGCTCAAGCATTTGCTGTCCAGAGGAATTAATCCTGATTTAGAAAGTGATGCAGGAACTCCTTTGGTTTGGGCTGCTGGTCATGCCCAACAAGCTGCTGTCAGTGTTCTGTTAGAACATGGTGCAAATCCTAATGCTGAAACTGATGATGGTATTACCCCACTCCTTTCATCCGTGGCAGCCAATTCTCTAGCATGCTTAGAGCTGTTAATTCAGGCAGGTGGTAAAGTAAATGTTAGTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGAAGTCTAGAACTTATAAATTGCTTATTGAAAGCTGGAGCTGATCCTAATATCTCTGACGAGGATGGTGTCAAGCCAATACAGGTTGCAGCTGCTAGGGGCAATCGTGGAGCTGTTGACATATTGTTCCCCTTGACGTCCAAAATTGATACTGTTCCTACTTGGACTATTGACGGGATACTTGAGTATATGCAATCTGAAACTAAAAAGCAACAGGATGAATTGGTAAATGCTAAAGAAACTAATCGGCCCAAGGATGCTGTTTTTCAGGAGCAAAATGTCCCTGAGGTGGCACCTGAAGCCAAAAAGAGAGCAGCAGAAGCAAAATCAAGAGCGGATGAGGCCTTTAAAAGCAAAGACTATCATATGGCTATAGATTCTTATACTCAAGCAATTGATCTGGACCCCACTGATGCTACTTTGCTATCCAATAGAAGTCTTTGTTGGATTAGATTGGGTCAAGCTGAGCATGCTTTAGCTGATGCAAAGGCGTGCAGAGCATTAAGACCAGATTGGCCAAAAGCTTGTTATAGGGAAGGGGCAGCTTTGCGTGTGTTGCAGAAGTTTGATGAAGCTGCAAATGCTTTTTATGAGGGAGTAAAGCTTGATCCCGAAAATAAGGAGCTTGTAAATGCGTTCAGGGAAGCTGTCGAAGCTGGGAGGCAATTTCATGGCAGAGCTGAAAATAATTCATAG 1383 0.449 MAPDASDALAVRQKVQLFLNAACSGNLDLLKKLAGQLDEGKDLPKTVEAIKDANKRGALHFAAREGQTEVCNYLLEELNLHVDSKDDDGETALIHAARQGHTATAKYLIDRAADPTIASNLGATALHHSAGIGDTELLKHLLSRGINPDLESDAGTPLVWAAGHAQQAAVSVLLEHGANPNAETDDGITPLLSSVAANSLACLELLIQAGGKVNVSAGGATPLHIAADNGSLELINCLLKAGADPNISDEDGVKPIQVAAARGNRGAVDILFPLTSKIDTVPTWTIDGILEYMQSETKKQQDELVNAKETNRPKDAVFQEQNVPEVAPEAKKRAAEAKSRADEAFKSKDYHMAIDSYTQAIDLDPTDATLLSNRSLCWIRLGQAEHALADAKACRALRPDWPKACYREGAALRVLQKFDEAANAFYEGVKLDPENKELVNAFREAVEAGRQFHGRAENNS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00071 460 Coils Coil 290 310 - -
Gabi3995g00071 460 Gene3D Tetratricopeptide repeat domain 332 447 IPR011990 GO:0005515
Gabi3995g00071 460 ProSiteProfiles TPR repeat profile. 334 367 IPR019734 GO:0005515
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Gabi3995g00071 460 SUPERFAMILY Ankyrin repeat 19 273 IPR036770 -
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Gabi3995g00071 460 PRINTS Ankyrin repeat signature 122 137 IPR002110 GO:0005515
Gabi3995g00071 460 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 88 117 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 121 150 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 153 182 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 218 247 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 251 280 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 54 82 IPR002110 GO:0005515
Gabi3995g00071 460 SMART ANK_2a 186 215 IPR002110 GO:0005515
Gabi3995g00071 460 SMART tpr_5 334 367 IPR019734 GO:0005515
Gabi3995g00071 460 SMART tpr_5 402 435 IPR019734 GO:0005515
Gabi3995g00071 460 SMART tpr_5 368 401 IPR019734 GO:0005515
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Gabi3995g00071 460 Pfam Ankyrin repeats (3 copies) 180 249 IPR002110 GO:0005515
Gabi3995g00071 460 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
Gabi3995g00071 460 SUPERFAMILY TPR-like 333 445 IPR011990 GO:0005515
Gabi3995g00071 460 Pfam Tetratricopeptide repeat 341 367 IPR019734 GO:0005515
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Gabi3995g00071 460 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 451 - -
Gabi3995g00071 460 Gene3D - 154 322 IPR036770 -
Gabi3995g00071 460 Gene3D - 5 153 IPR036770 -
Gabi3995g00071 460 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Gabi3995g00071 460 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00071 125 305 Ion Channels AT2G25600 30.493 1.12e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00071 - - gmx:100798118 781.941