Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00069 ATGGTGGTGAAAGTGAAGAGGCAAACGCTGGAAGCATGCATGACATGCCCTCTTTGCCATAAGCTATTGAAAGATGCTACCACCATATCTCTCTGTCTTCACACGTTTTGCAGGAAGTGCATATATGAGAAACTTTCAGATGAGGAGATGGATTGCTGTCCAGTTTGCAATATTGATCTGGGTTGCCTTCCCGTGGAAAAACTCAGGCCAGACCACAATTTGCAAGATATTAGAGCCAAAATATTCCCTTTTAAACGAAGAAAGATCAAAGCCCAAGAAGTTGTTCCTTCAATATCCCTGCCAGCGAAAAGGAAGGAAAGATCACTTTCATCATTGGTAGTAAGTGCTCCCAAAGTTTCAACGCAGACTGGCTTTACAGGAAAGAGAACAAAAACTGGTACTAGAAAGGCTGCTGCTTTACGTGCATGCAATTTTATTCTTGAAGAATCCATAAAGAAGGAAGAAACAAATGGTGAAACAAATGGTGAAGATATTCTGGATTCTTCCATAGCTGAGTCTTCTAAGAAGCATAGGCCCAATGAAGATACAGAGAACAGTATGGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCAGCCAACAGAACAAAGTCGTCCAGGTCAAATTCACAAGGGACTCCTCATGCCAAATTAGAGTCTCCAACTACTCCTCATGGGGGAGTAGAGATTCCTGAAATTACAACCAAATCAGAGCCACCTGCTTCTGTCCAGAGGGAATTACACATGCCTAAAACCAAAAACAAGGATAATGGACATAAAACAAAGTTTGGAGATAACAAGGATGGAAACACATTTCCTTCAGGGCCAGTGAAGCGAAGAAGGCTACGTCCTGCTAGTCAGAAAAGAGCAGCAGGATCTGAGATGTCTGCCTCAACCCAAGTCATGTTAGATGCAACAGGGGGCAAGTGCAACAGGAAAAACTGTCCTATTTGGTTTTCATTAGTTGCTTCCGAAGACCAGAAAGGAGATGTTCCCTTGCCACAGATCTCAGCATGTTATTTAAGAATAAAGGATGGTACTGTTCCTGTCTCATTTATTCGAAAGTACCTTGTGAAGAAACTTAATCTTGCCAGCGAAGTAGAGGTGGAAATAATGTGCCGGGGTCAACCCGTGCTTCCATCTTTGCAACTGCATAACTTAGTAGATCTGTGGTTCCGCACAGCTTCAACCTCTAAAAAAATGCCGGCATCTGTGGGCTCCTCGGCCAAGGACTTTGTGATGGTTTTATCATATTGTCGAAGGGCCTTGCCTGATTGA 1299 0.4349 MVVKVKRQTLEACMTCPLCHKLLKDATTISLCLHTFCRKCIYEKLSDEEMDCCPVCNIDLGCLPVEKLRPDHNLQDIRAKIFPFKRRKIKAQEVVPSISLPAKRKERSLSSLVVSAPKVSTQTGFTGKRTKTGTRKAAALRACNFILEESIKKEETNGETNGEDILDSSIAESSKKHRPNEDTENSMDLTEGKADLWTPLNCLVEAANRTKSSRSNSQGTPHAKLESPTTPHGGVEIPEITTKSEPPASVQRELHMPKTKNKDNGHKTKFGDNKDGNTFPSGPVKRRRLRPASQKRAAGSEMSASTQVMLDATGGKCNRKNCPIWFSLVASEDQKGDVPLPQISACYLRIKDGTVPVSFIRKYLVKKLNLASEVEVEIMCRGQPVLPSLQLHNLVDLWFRTASTSKKMPASVGSSAKDFVMVLSYCRRALPD 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00069 432 SMART ring_2 16 56 IPR001841 -
Gabi3995g00069 432 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Gabi3995g00069 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 106 IPR013083 -
Gabi3995g00069 432 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 429 IPR044807 GO:0004842
Gabi3995g00069 432 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Gabi3995g00069 432 MobiDBLite consensus disorder prediction 209 225 - -
Gabi3995g00069 432 Gene3D - 305 409 - -
Gabi3995g00069 432 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Gabi3995g00069 432 CDD RING-HC_PCGF 14 57 - -
Gabi3995g00069 432 MobiDBLite consensus disorder prediction 255 273 - -
Gabi3995g00069 432 MobiDBLite consensus disorder prediction 154 192 - -
Gabi3995g00069 432 MobiDBLite consensus disorder prediction 169 189 - -
Gabi3995g00069 432 SUPERFAMILY RING/U-box 10 81 - -
Gabi3995g00069 432 MobiDBLite consensus disorder prediction 209 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00069 Gabi-Chr3995 383010 389273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00069 1 351 C3H Transcription Factor Family AT2G30580 44.865 8.58e-86 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00069 K16277 - gmx:100783999 694.115