Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00064 ATGACAAGTGTTATGGGGTCAGAGCGAGACAAGTACAGCATGATAAATTTCGAAGAAACCGAGTTGCGACTCGGGCTGCCTCGGAATGGAAACGAAGGAGAGTCCACACTGAAGAACACTTGTAGTACCTTCACTGGAAAGAGAGGCTTTTCGGAGACAAGCAGTGCTAGTGTGGATTTGAAGCTTAATCTTTCATCAAATAATGTCTTGGCCTCAGCCGACAAGGCTAAAGAGAAGACCGTTGCTACCACTGTTGCAGCTCCTCCTGCTCGCGCTAACGACCCAGCAAAACCGCCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTCCGGTCATTCAGAAAGAACATTGCTAACGTTCAAAGGACCACCACCAACAATGCCGCAGCGGCTTTCGTGAAGGTGAGCATGGATGGTGCACCCTATTTACGCAAGGTGGACTTGAAGTTGTACAAGAGCTATCAAGAGCTGTCAGATGCCCTGGCTAAAATGTTTTGTTCATTCACCAATGGCAAATGTGGATCCCAAGGCATGAAGGACTTGCTAAATGAGAGCAAATTGATAGATCTTCTGAATGGCTCTGATTACGTACCAACTTATGAAGACAAAGATGGAGACTGGATGCTTGTGGGTGATGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCGTGCGCATTATGAAAGGATCTGAGGCAATCGGGTTAGCACCGAGAGCACTGGAAAAATGCAAGAACAGAAGCTGA 747 0.4793 MTSVMGSERDKYSMINFEETELRLGLPRNGNEGESTLKNTCSTFTGKRGFSETSSASVDLKLNLSSNNVLASADKAKEKTVATTVAAPPARANDPAKPPAKAQVVGWPPVRSFRKNIANVQRTTTNNAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFCSFTNGKCGSQGMKDLLNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRVRIMKGSEAIGLAPRALEKCKNRS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00064 248 Gene3D - 124 241 - -
Gabi3995g00064 248 FunFam Auxin-responsive protein 125 240 - -
Gabi3995g00064 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 235 IPR003311 GO:0005634|GO:0006355
Gabi3995g00064 248 SUPERFAMILY CAD & PB1 domains 127 229 - -
Gabi3995g00064 248 ProSiteProfiles PB1 domain profile. 130 230 IPR000270 GO:0005515
Gabi3995g00064 248 Pfam AUX/IAA family 19 239 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00064 Gabi-Chr3995 347734 350439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00064 134 233 B3 DNA Binding Superfamily AT3G61830 35.000 9.56e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3995g00064 AUX_IAA 9.9e-83 CL0072