Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00063 ATGACAAGTGTTATGGGGTCAGAGCGAGACAAGTACAGCATGATAAATTTCGAAGAAACCGAGTTGCGACTCGGGCTGCCTCGGAATGGAAACGAAGGAGAGTCCACACTGAAGAACACTTGTAGTACCTTCACTGGAAAGAGAGGCTTTTCGGAGACAAGCAGTGCTAGTGTGGATTTGAAGCTTAATCTTTCATCAAATAATGTCTTGGCCTCAGCCGACAAGGCTAAAGAGAAGACCGTTGCTACCACTGTTGCAGCTCCTCCTGCTCGCGCTAACGACCCAGCAAAACCGCCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTCCGGTCATTCAGAAAGAACATTGCTAACGTTCAAAGGACTGCCGCCGCCACCACCACCACCACCACCGCAGCTACTGCTGCAGCCACCACCAACAATGCCGCAGCGGCTTTCGTGAAGGTGAGCATGGATGGTGCACCCTATTTACGCAAGGTGGACTTGAAGTTGTACAAGAGCTATCAAGAGCTGTCAGATGCCCTGGCTAAAATGTTTTGTTCATTCACCAATGGCAAATGTGGATCCCAAGGCATGAAGGACTTGCTAAATGAGAGCAAATTGATAGATCTTCTGAATGGCTCTGATTACGTACCAACTTATGAAGACAAAGATGGAGACTGGATGCTTGTGGGTGATGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCGTGCGCATTATGAAAGGATCTGAGGCAATCGGGTTAGCACCGAGAGCACTGGAAAAATGCAAGAACAGAAGCTGA 792 0.4924 MTSVMGSERDKYSMINFEETELRLGLPRNGNEGESTLKNTCSTFTGKRGFSETSSASVDLKLNLSSNNVLASADKAKEKTVATTVAAPPARANDPAKPPAKAQVVGWPPVRSFRKNIANVQRTAAATTTTTTAATAAATTNNAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFCSFTNGKCGSQGMKDLLNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRVRIMKGSEAIGLAPRALEKCKNRS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00063 263 SUPERFAMILY CAD & PB1 domains 143 244 - -
Gabi3995g00063 263 Gene3D - 139 256 - -
Gabi3995g00063 263 FunFam Auxin-responsive protein 140 255 - -
Gabi3995g00063 263 Pfam AUX/IAA family 19 254 IPR033389 -
Gabi3995g00063 263 ProSiteProfiles PB1 domain profile. 145 245 IPR000270 GO:0005515
Gabi3995g00063 263 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 250 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00063 Gabi-Chr3995 347734 350439 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00063 149 253 B3 DNA Binding Superfamily AT4G23980 33.333 7.51e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3995g00063 AUX_IAA 9.3e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00063 K14484 - gmx:100796888 346.28