Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00062 ATGACAAGTGTTATGGGGTCAGAGCGAGACAAGTACAGCATGATAAATTTCGAAGAAACCGAGTTGCGACTCGGGCTGCCTCGGAATGGAAACGAAGGAGAGTCCACACTGAAGAACACTTGTAGTACCTTCACTGGAAAGAGAGGCTTTTCGGAGACAAGCAGTGCTAGTGTGGATTTGAAGCTTAATCTTTCATCAAATAATGTCTTGGCCTCAGCCGACAAGGCTAAAGAGAAGACCGTTGCTACCACTGTTGCAGCTCCTCCTGCTCGCGCTAACGACCCAGCAAAACCGCCTGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTCCGGTCATTCAGAAAGAACATTGCTAACGTTCAAAGGAGTAACAACAACGAAGCAGAAAAGAAGGTGGCAGCAGCTGCCGCCGCCACCACCACCACCACCACCGCAGCTACTGCTGCAGCCACCACCAACAATGCCGCAGCGGCTTTCGTGAAGGTGAGCATGGATGGTGCACCCTATTTACGCAAGGTGGACTTGAAGTTGTACAAGAGCTATCAAGAGCTGTCAGATGCCCTGGCTAAAATGTTTTGTTCATTCACCAATGGCAAATGTGGATCCCAAGGCATGAAGGACTTGCTAAATGAGAGCAAATTGATAGATCTTCTGAATGGCTCTGATTACGTACCAACTTATGAAGACAAAGATGGAGACTGGATGCTTGTGGGTGATGTACCCTGGGAAATGTTCGTGGAATCATGCAAGCGCGTGCGCATTATGAAAGGATCTGAGGCAATCGGGTTAGGTCTGAATGTTATTTACTGA 810 0.4877 MTSVMGSERDKYSMINFEETELRLGLPRNGNEGESTLKNTCSTFTGKRGFSETSSASVDLKLNLSSNNVLASADKAKEKTVATTVAAPPARANDPAKPPAKAQVVGWPPVRSFRKNIANVQRSNNNEAEKKVAAAAAATTTTTTAATAAATTNNAAAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFCSFTNGKCGSQGMKDLLNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRVRIMKGSEAIGLGLNVIY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00062 269 FunFam Auxin-responsive protein 152 267 - -
Gabi3995g00062 269 SUPERFAMILY CAD & PB1 domains 155 256 - -
Gabi3995g00062 269 Gene3D - 151 268 - -
Gabi3995g00062 269 ProSiteProfiles PB1 domain profile. 157 257 IPR000270 GO:0005515
Gabi3995g00062 269 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 262 IPR003311 GO:0005634|GO:0006355
Gabi3995g00062 269 Pfam AUX/IAA family 19 264 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00062 Gabi-Chr3995 347734 350439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00062 134 260 B3 DNA Binding Superfamily AT3G61830 29.921 6.06e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi3995g00062 AUX_IAA 5.1e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00062 K14484 - gmx:100796888 335.109