Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00058 ATGGCGGGTAATTGCTCCTCCGAGGGTTTGGGTGATGATTTCTTGGAGCAGATCTTGGCGGTGCCTGAAGGTGGAGGAGCTATAGGGTATGGGAGGAGCCCAATGATGTTGCAGTTAGGGTCCACAAATGGTGGTGGTGATGGGTTCAGAGAGTCCTTGGGTATGGGTATAGGTATGGGCATGCCTTTGGGGTTGAATTTGGAACCAGGCTTTTTGAGACACCAACAACACACGAGCAATGATCTTCGTCTGAATAACAACCACCATCATAATAATACTAACAACAGTACTACCTCATCATCCTCTTCTACTTCAGGATTCACTGAAAGGGGCATGTATGCAGGGTTGGGACAACTTCATAGTCATAGTCATGCTCATGCTCAGTCTGTTCGCCCCACCGTCCCATCTCCTGCTCAATCCCTACTCCACCCGCACCACCACCAGCACCTTCATAGCCAGCTACCAACACCAGTATCTGTTGCTCCTGTTCCACATCCACCTGGTATACGCCCTCGAGTGCGAGCAAGAAGAGGGCAAGCTACAGACCCTCACAGTATTGCTGAGCGATTACGTCGTGAAAGAATCGCTGAAAGAATGAAGGCATTGCAGGAACTAGTTCCCAGCGCCAATAAGACAGACAGAGCAGTGATGCTTGACGAAATTGTGGATTATGTCAAGTTCTTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGAATGGGTGGAACTGGTGCAGTTGCTCAGCTTGTGGCTGATGTTCCCCTATCTGCACTGGAGAGTGATGACATTGAAGGTGGGGCCAATCAGCAAGCCTGGGACAAGTGGTCCAATGATGGCACAGAACAAGAAGTTGCTAAACTTATGGAAGAAGATGTTGGAGCTGCTATGCAATATCTTCAGTCAAAGGCCCTTTGCATCATGCCAATATCTCTAGCCTCAGCCATCTTTTATAACCCCCAATCAGAAGCACCATCATTCATCAGACCTGAATCAAACAGCCATTCTTAG 1008 0.4861 MAGNCSSEGLGDDFLEQILAVPEGGGAIGYGRSPMMLQLGSTNGGGDGFRESLGMGIGMGMPLGLNLEPGFLRHQQHTSNDLRLNNNHHHNNTNNSTTSSSSSTSGFTERGMYAGLGQLHSHSHAHAQSVRPTVPSPAQSLLHPHHHQHLHSQLPTPVSVAPVPHPPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSANKTDRAVMLDEIVDYVKFLRLQVKVLSMSRMGGTGAVAQLVADVPLSALESDDIEGGANQQAWDKWSNDGTEQEVAKLMEEDVGAAMQYLQSKALCIMPISLASAIFYNPQSEAPSFIRPESNSHS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00058 335 Gene3D - 174 236 IPR036638 GO:0046983
Gabi3995g00058 335 MobiDBLite consensus disorder prediction 122 136 - -
Gabi3995g00058 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 239 IPR036638 GO:0046983
Gabi3995g00058 335 Pfam Helix-loop-helix DNA-binding domain 184 228 IPR011598 GO:0046983
Gabi3995g00058 335 MobiDBLite consensus disorder prediction 82 109 - -
Gabi3995g00058 335 FunFam Transcription factor bHLH66 176 241 - -
Gabi3995g00058 335 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 72 313 - -
Gabi3995g00058 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Gabi3995g00058 335 SMART finulus 185 234 IPR011598 GO:0046983
Gabi3995g00058 335 MobiDBLite consensus disorder prediction 82 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00058 Gabi-Chr3995 318827 324773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00058 164 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 73.837 8.60e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3995g00058 HLH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00058 - - qsa:O6P43_007633 375.941