Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00056 ATGGAAAGAGTGTTGTCAGTGGATGAAATATCGGAACAGTACTTTTGGTCGGATGAATCGTGCAAGTCAAATTCAAAGATGAATCGGAGCGATTCCGAATGGGCATTCCAGCGTTTCTTACAAGAAGCTTCTTCTGCATCGTCCACCGTTGATGTCAAACTCGCGAAAAACAACTTCCCCGTTTCTGTTGATTCCGATGACTACCAGGCTATACTCAAGACCAAGCTCAATCTCGCTTGCGCCGCCGTCGCTTTGACTCGGGGGTCTATGGTCAAATCTCAAAATCCTGCCACTTTTCCTGATTGTGGGTCACAGGCATCTAATCCTTCTGAAGTTGGATCTCAGGGTACTTTGAAAGGATCTGGCCCTTCTGGAAATGATCCATATAAATCACAAAATAAAGGTGTCAAAGTACCAGTTGGGGTTCCTTGCTTGCTTTCCATGCAAAACAAACCTGTTGTTTCAATCAGGTCAATAACAAGTGGATCATCAAAAGAACAGTCAGATGATGAGGAAGCTGAGGGAGAGATTAATATGATTGAAAACATGGACCCTTCTGATGCAAAACGAGTAAGGAGGGAGTCTGCCAGACGCTCAAGAAGAAGAAAGCAGGCTCATTTAACTGAGCTTGAGACACAGGTCTCTCAATTAAGAGATGAAAATTCCTCATTGTTAAAGCGCTTAACGGATGTGAGGCAGAAATACAGTGATGCTGCTGTTGACAACAGAGTATTAAAAGCTGATGTCGAAACATTAAGAGCTAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACTGGGTTGAACCCAACGTTTCAAGCTGTTTCTGGGATATCATCAATGGGAATGTCATTATTTGATGGAAGGCCTTCTGAGACATTAACTGATGCGGCTGTTCCTGTGAAAGAAGACCCAAATCATAACTTTTGTCAACCCACTTCTAACAATCTTGTGTCCAGTCATGATCTGAGAGTCAACAAAGGGGTGGGAAGCATTTCTTCGATTGAAAGTGTGCAGCAGAACACTGCACCAGTGGTAGGTGGTAAGAAGATGGGGCGAACAACTTCCCTGCAGCGGGTGACTAGCTTGGAACATCTTCAAAAGCGGATTCGTGGCGGTGTCGATTCATCTGGACCTCTTTCTAATGGAAAGCAGTGA 1161 0.4419 MERVLSVDEISEQYFWSDESCKSNSKMNRSDSEWAFQRFLQEASSASSTVDVKLAKNNFPVSVDSDDYQAILKTKLNLACAAVALTRGSMVKSQNPATFPDCGSQASNPSEVGSQGTLKGSGPSGNDPYKSQNKGVKVPVGVPCLLSMQNKPVVSIRSITSGSSKEQSDDEEAEGEINMIENMDPSDAKRVRRESARRSRRRKQAHLTELETQVSQLRDENSSLLKRLTDVRQKYSDAAVDNRVLKADVETLRAKVKMAEETVKRITGLNPTFQAVSGISSMGMSLFDGRPSETLTDAAVPVKEDPNHNFCQPTSNNLVSSHDLRVNKGVGSISSIESVQQNTAPVVGGKKMGRTTSLQRVTSLEHLQKRIRGGVDSSGPLSNGKQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00056 386 Coils Coil 242 262 - -
Gabi3995g00056 386 CDD bZIP_plant_GBF1 199 236 IPR045314 GO:0003700|GO:0006355
Gabi3995g00056 386 Coils Coil 193 234 - -
Gabi3995g00056 386 MobiDBLite consensus disorder prediction 92 134 - -
Gabi3995g00056 386 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 193 234 IPR004827 GO:0003700|GO:0006355
Gabi3995g00056 386 Pfam bZIP transcription factor 193 236 IPR004827 GO:0003700|GO:0006355
Gabi3995g00056 386 Pfam Basic leucine-zipper C terminal 251 375 IPR020983 -
Gabi3995g00056 386 MobiDBLite consensus disorder prediction 92 131 - -
Gabi3995g00056 386 MobiDBLite consensus disorder prediction 157 206 - -
Gabi3995g00056 386 SMART brlzneu 182 244 IPR004827 GO:0003700|GO:0006355
Gabi3995g00056 386 Gene3D - 190 238 - -
Gabi3995g00056 386 PANTHER BASIC LEUCINE ZIPPER 63 1 375 - -
Gabi3995g00056 386 SUPERFAMILY Leucine zipper domain 193 235 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00056 Gabi-Chr3995 308284 312966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00056 1 273 bZIP Transcription Factor Family AT4G02640 36.474 2.09e-37 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi3995g00056 bZIP_C 2.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00056 K25784 - gmx:778137 475.707