Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00040 ATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCCCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTTAAGAAGATTCGCCTTGCCCGCCAAACTGAGCGCTCTCGTAGATCCGCACACCTGGAGATGGAGCTCATCTCCAAATTAAGAAATCCTTTTATTGTGGAGTATAAAGATTCATGGGTTGAAAAGGGTTGCTATGTGTGCATTATCATAGGTTATTGTGAGGGTGGAGATATGGCGGAAGCTATAAAGAAAGCTCACGGTGTTATGTTTTCTGAGGAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCACATGAACCATATTCTTCATCGTGATGTTAAGTGCTCAAATATATTCTTGACAAAAGATCATGACATGGTTCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTTACTTCCTCTGTTGTGGGAACTCCTAGCTATATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACCTCGCATAAGCCTGCATTCAAAGCATTTGATATACAATCACTGATTAACAAGATTAATAAGTCTGTAGTGGCTCCGCTGCCAACAAAATATTCTGCTGCATTTCGAGGTCTTGTTAAAAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGCTACTTGGGCACCCACATCTTCAACCTCATGTTCTTAAGATCCATCTCAAAATCAATAGCCCCAGGCGAAATACGTTGTCAGGTCATAGTCCAGAATCCAACTGCATGAAGAAAACTAGATTTTTGAAGCAAGATGATCCTGTTTCTATCCCTGGGGATAAATGGTATTCTTTCAGCAATGATCGGACTTTAAATCCTAGTGTATCTGGAGCAGACCAAGATTCTCTATGCTCTACCCTAGAAATAAATTGTACTCCTGATCATTTGAATCAAAGATTAGCTGAACTGTGTGTTGGAGATAGCCATGAAGTGAAGTCAATCCATAAGCCAGTTGTTTCCAAAACTCCTAGTATTGCCAAGACTCCTAGTCCTAGACCCACTTCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGAATCCTCAAAAAATCATAACGCGCTTCCTGTTTCACGCAATACCAAACAAACTGTCCATACGATTCGCAGAGCATCATTGCCGTTGCCAAGAAGTAGTGCCGTTCGGCAGCCTCCTCGCAGGCCCAGTATTGGTTTTCTTGGCCATTTAAATTCGCCCAATATTTCAGTTAACACACCCCGTATTGATAAGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTTCTTCCCATCAATAGACCTTCACCAACATCTGCGAAGGGTTCCTCAGGCTCCCCTCCTTGTGGCGATGATTCAACTTTGATAGACAAATGCACAGTTGAGGTATGTGACAGAGCCTACATCAAACCTAGTCGTACTGATGCCTGGCGGGGAATCAAGCGCAGCATGTTCAAGGAAAATGAAGAGGACAAAAGTGACTCATCTGATCAACATGCTACTGCTGGAGCATCTAGCCACAACTCTTCAGACTTGCGCCGCCGGCAGTTTGATACTTCATCATTCCAACAAAGGGCTGAAGCTTTAGAAGGATTGCTTGAATTTAGTGCGAGATTACTGCAGCAGGAAAGGTATGGAGAACTTGGTGTTTTGTTAAAACCGTTTGGGCCCGGGAAGGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGAGAACACTTTCAATCGGGAACAATCCGCTTAA 1869 0.4264 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKAHGVMFSEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDMVLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQSLINKINKSVVAPLPTKYSAAFRGLVKSMLRKNPELRPSAAELLGHPHLQPHVLKIHLKINSPRRNTLSGHSPESNCMKKTRFLKQDDPVSIPGDKWYSFSNDRTLNPSVSGADQDSLCSTLEINCTPDHLNQRLAELCVGDSHEVKSIHKPVVSKTPSIAKTPSPRPTSSKASATPKKSMESSKNHNALPVSRNTKQTVHTIRRASLPLPRSSAVRQPPRRPSIGFLGHLNSPNISVNTPRIDKIAEFPLASYEDQFLPINRPSPTSAKGSSGSPPCGDDSTLIDKCTVEVCDRAYIKPSRTDAWRGIKRSMFKENEEDKSDSSDQHATAGASSHNSSDLRRRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKENTFNREQSA 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00040 622 MobiDBLite consensus disorder prediction 467 490 - -
Gabi3995g00040 622 Gene3D Transferase(Phosphotransferase) domain 1 84 274 - -
Gabi3995g00040 622 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Gabi3995g00040 622 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3995g00040 622 MobiDBLite consensus disorder prediction 359 437 - -
Gabi3995g00040 622 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3995g00040 622 MobiDBLite consensus disorder prediction 469 488 - -
Gabi3995g00040 622 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 572 - -
Gabi3995g00040 622 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3995g00040 622 MobiDBLite consensus disorder prediction 367 412 - -
Gabi3995g00040 622 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gabi3995g00040 622 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gabi3995g00040 622 CDD STKc_Nek 3 258 - -
Gabi3995g00040 622 SUPERFAMILY Protein kinase-like (PK-like) 1 317 IPR011009 -
Gabi3995g00040 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gabi3995g00040 622 MobiDBLite consensus disorder prediction 525 557 - -
Gabi3995g00040 622 FunFam Serine/threonine-protein kinase Nek2 84 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00040 Gabi-Chr3995 214971 221812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00040 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 5.74e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi3995g00040 Pkinase 2.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00040 K08857 - gmx:100796019 1044.65