Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00039 ATGTTCGATGAAACACCAGAACAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTATCCACCCAACTCCATGTCTCTTCAACCCCAAATAACTTCCTACCCTTTGATCCTAATTATAACCCTTTTCATCATCAATTGCCACTCCAACCCAATCTCTTGCACCCATTGCAACCTCATTCTCCCACCGACAAACACAAAGAGAATGAACCAAACTGCACGCTCTCTTCAATCAACACGGAGATTGAAAGAGATCAAAGACAATTACCAGAGTTAATAGATTCATGGACTAACGATGAAGTGCTTGCACTGTTGAGGATCAGATCTAGCATGGAAAGTTGGTTCCCAGAGCTCACATGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAAAAGTTTGAACATGAAAGCAGATATTTCATCAATATTAACAATGGTAAGAATTTCCGGTTTCTCAGTGAGCTTGAAGAGATTTATCAAGGTGATCAAAACACTGATCCTACTGGTAAAGGGGTTGTGACTGAAAAGACTCAGCAACTTGAAAAGCCAATGGGCCATGCAATGGAAGAAAATTATTCGAGAGATGTTGACGCACCAGCGACAAAGCAACATTGTGATGGAATTGACAAGTTTGTGGAAAAGTCAAAGGACCGAAAGAGGAAGAGGCGTAGTGATAGGTTTGAAATGTTCAAGGGTTTTTGTCACGGTGTGGTGAACAAGATGATGGCTCAACAAGAAGATATTCACAATAAGCTCCTAGAAGACATGTTGAAAAGAGATGAAGAGAAGTTTGCAAGAGAGGAATCATGGAAGAAGCAAGAGATGGATAGGATGAACAAGGAGCTTGAGATTATGGCACAAGAACAAGCTATTGCAGGTGATAGACAAGCCACCATAATTGAATTCTTAAAGAAATATGAAAATGGTTCCAATTATTCTTCTTCCCCATTGCATTCTCAAAACCCTAATACTTCTACTGAACAGAACAATTTTGAGCCAACACCTTCTAATACAGAAAACCCTAGCTCAAGTGACACATTAGTACAAGTTCCTTCTTCTTCCAATTCATCTCCAGCTCCACACAACCCTAGTTCCTCTCTCAACAGCCTGAATAATCCACTAGAGTCAAATTCAGTTTCGAAATATAAAGTCCCTTCAACCCCTTTGTCCACCACTGAAAAAGAGTATGTTGGGAGAAGATGGCCAAGAGATGAAGTGTTAGCACTAATAAACCTCAGGTGCACAAGTTTAAATAACAACAATGAAGACAAGGAAGGAAACAACAAGGCTCCTCTGTGGGAGAGAATCTCACAAGGGATGTCAGAGCTGGGATACAAGAGAAGTTCAAAGAGGTGCAAGGAAAAATGGGAGAACATAAACAAGTACTTTAGAAAAACCAAGGATGTTAATAAGAAAAGGTCCCTTGATTCTAGGACATGTCCTTATTTCCATCAACTGAATTTCTTGTATAGTCAAGGAAAACTTGTTCCACAATCTGAAATGCAAGGAAATCACTTGAATCCAACCACAAATTCTGGGAAAGTGCCATCAGATCAAGCCCAAGTTGAGTCTTCTCAAGCGGGGTCTAGTGGTTTGATTTAG 1641 0.4065 MFDETPEQFHQFIAPRTTLPLHLSTQLHVSSTPNNFLPFDPNYNPFHHQLPLQPNLLHPLQPHSPTDKHKENEPNCTLSSINTEIERDQRQLPELIDSWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGFKKSAEKCKEKFEHESRYFININNGKNFRFLSELEEIYQGDQNTDPTGKGVVTEKTQQLEKPMGHAMEENYSRDVDAPATKQHCDGIDKFVEKSKDRKRKRRSDRFEMFKGFCHGVVNKMMAQQEDIHNKLLEDMLKRDEEKFAREESWKKQEMDRMNKELEIMAQEQAIAGDRQATIIEFLKKYENGSNYSSSPLHSQNPNTSTEQNNFEPTPSNTENPSSSDTLVQVPSSSNSSPAPHNPSSSLNSLNNPLESNSVSKYKVPSTPLSTTEKEYVGRRWPRDEVLALINLRCTSLNNNNEDKEGNNKAPLWERISQGMSELGYKRSSKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLNFLYSQGKLVPQSEMQGNHLNPTTNSGKVPSDQAQVESSQAGSSGLI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00039 546 ProSiteProfiles Myb-like domain profile. 406 473 IPR001005 -
Gabi3995g00039 546 ProSiteProfiles Myb-like domain profile. 98 147 IPR001005 -
Gabi3995g00039 546 MobiDBLite consensus disorder prediction 324 405 - -
Gabi3995g00039 546 FunFam Trihelix transcription factor GT-2 99 155 - -
Gabi3995g00039 546 Gene3D - 99 154 - -
Gabi3995g00039 546 Gene3D - 414 478 - -
Gabi3995g00039 546 CDD GT1 412 480 - -
Gabi3995g00039 546 PANTHER FI21293P1 72 540 - -
Gabi3995g00039 546 MobiDBLite consensus disorder prediction 512 546 - -
Gabi3995g00039 546 CDD GT1 99 153 - -
Gabi3995g00039 546 Pfam Myb/SANT-like DNA-binding domain 412 501 IPR044822 -
Gabi3995g00039 546 Pfam Myb/SANT-like DNA-binding domain 97 163 IPR044822 -
Gabi3995g00039 546 FunFam Trihelix transcription factor GTL2 414 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00039 Gabi-Chr3995 201181 203717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00039 1 505 Trihelix Transcription Factor Family AT5G28300 39.860 3.53e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi3995g00039 Myb_DNA-bind_4 5.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00039 - - gmx:100801868 632.869