Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3995g00008 ATGGCATCTGAGCAACACGACACCGTTTTCCCCGAAGAAGACATGGACGACGACGACGACGAATCTCAGGAGGACGAGGAAGAAGAAGAAGACATGGACGACGACGACGTTTTAGGTGATGATGAAGAAAACGAACCTTTTCCTTCCGCCTCCTCCGCTCTCGCCGTCACCGTCGCCGTTCCCGGTTCCGCTATCTCAAACGGAGACAAACCTCCAATTTCGACGCCAACCTCCACAGCAATTGTCGTCGCCGACTCACCCGATCCGAAACGGCAGCGCGTGGATCAAATTGAAGAGAAAAAGCCTTTGGACGATTCCCGGAGGCTGTTTCAACGACTGTGGACCGATGAGGACGAGATCGAGCTGTTGCAGGGTTTCCTCGACTACACTTCACAGCGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGATCAAATCAAGTGTAAGCTCCAACTCGATTTCAACAAGAACCAGCTCGTCGAGAAGATCCGGAGGTTGAAGAAGAAATACCGAAACGTTCTCAACAAGATTGGCTCCGGTAAAGAATTTTCATTCAAGAGTGCTCACGATCAAGCCACCTTCGAAATCTCACGCAAGATCTGGAGCAACATGGGCCAAATCGGCGGCGGTGGTGCCGTCGAAGATAATGCCCTGGACGACGACGAAATCAACCTCAACCCCATCTCTTACCCTAACCCTAATTTTAGTCCCTCGGTGCCCAAAATTGAATTGATGTTTGGGAATTCGGCAGAGAAGAAAACGCGGAAGCGGTCACGGCCTCGATCGGGGAATGATGGATCAGCGTCAAACAAAGATCATACGAATTATAACAGCAATGCTACCCCTACTGTTACTACTACCGCTACTGCTGCTGCTGCTGCTGCTGCTACTACTACGGCTAACACTTATAATAATTATAACAGTGGGCATAGTATACCTGGTTTGATTGAAGAGACTGTGAGGAGTTGTTTGTCGCCGTTGTTGAAGGAGTTGGTGGCTGGTGCCATGGGGGGTCCATTTGGGGGAAGAGGGTTGTCGTTGAATCCGGTGCCGTTGATGAATTTGGGTTTTGGGGGCGTGGAAATGGTGGATGAGAAATGGAGGAAGCAACAGATTTTGGAATTGGAAGTGTACTCGAAGCGGTTGGAGCTTGTGCAGGATCAGATCAAGGCTGCTCTGGAGGAATTGCGATCAGCTGGAGGAGTATGA 1215 0.5037 MASEQHDTVFPEEDMDDDDDESQEDEEEEEDMDDDDVLGDDEENEPFPSASSALAVTVAVPGSAISNGDKPPISTPTSTAIVVADSPDPKRQRVDQIEEKKPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKCKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSNMGQIGGGGAVEDNALDDDEINLNPISYPNPNFSPSVPKIELMFGNSAEKKTRKRSRPRSGNDGSASNKDHTNYNSNATPTVTTTATAAAAAAATTTANTYNNYNSGHSIPGLIEETVRSCLSPLLKELVAGAMGGPFGGRGLSLNPVPLMNLGFGGVEMVDEKWRKQQILELEVYSKRLELVQDQIKAALEELRSAGGV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3995g00008 404 Pfam Protein of unknown function, DUF573 110 204 IPR007592 GO:0006355
Gabi3995g00008 404 MobiDBLite consensus disorder prediction 10 43 - -
Gabi3995g00008 404 Coils Coil 158 178 - -
Gabi3995g00008 404 MobiDBLite consensus disorder prediction 250 264 - -
Gabi3995g00008 404 Coils Coil 377 397 - -
Gabi3995g00008 404 PANTHER BNAANNG10740D PROTEIN-RELATED 6 397 IPR007592 GO:0006355
Gabi3995g00008 404 MobiDBLite consensus disorder prediction 250 284 - -
Gabi3995g00008 404 MobiDBLite consensus disorder prediction 1 55 - -
Gabi3995g00008 404 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3995g00008 Gabi-Chr3995 85021 86729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3995g00008 1 400 GeBP Transcription Factor Family AT5G28040 42.792 5.20e-90 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Gabi3995g00008 DUF573 6.5e-34 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3995g00008 - - gmx:100779712 503.056