Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3991g00054 ATGGGAACTCCAGAATTTCCAGATCTAGGCAAGCATTGTGCCCTTGTTGATTGCAAACAGATTGATTTCTTGCCTTTCACATGTGATCGCTGTAATCAGGCATATTGTTTGGAGCACCGAAGTTACATTAAGCATCATTGTACAAAAGCCAACAAACGAGATGTGACTGTTGTTATATGTCCCCTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAATATAACGTGGGAAAAACATGTTGACACTGACTGTGATCCATCAAATTATGAGAAAGTCACAAAGAAGAAAAAGTGCCCGGCCCCATTATGCAGAGAGATCTTGGTATTCTCAAACACAATTAAGTGCAGGGACTGCATGGTGGACCATTGTTTGAAGCACAGGTTTGGACCTGATCACAAATGTTCTGGGCCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTGAATGGGAGTAGAAAAGAGGCGTCAAAGCCGAATTTAACTTCAACCACGTCATCTAAATGGACTACAAGCTTGCTTAACGTGGCTTCTAATCTTCGAGCTTCAGCTGAAGCTGGCATGACAAAATTGAGTGGTGAAATTAACCAAGCTTGGCAAACAGCAAGGGATGGGGTGGGACAGAGCAGTGGCAGTGGCAGTGGAAATAGAAATGATCAAGTGGAGCAATGCCCTCAGTGTGGAGCAAAGTTTTCCTCGGTCAGTACTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAATAGAAACCAATCTAGGGTGAAGAAGGTGACAATTGATGCATGTCCCAAGTGTAGTAGAGGATTTATAGACCCGGTGTCCCTCGTGCAGCATGTTGAGCGGGATCATGGTGGCAGTTCTGGAGCATAA 882 0.4342 MGTPEFPDLGKHCALVDCKQIDFLPFTCDRCNQAYCLEHRSYIKHHCTKANKRDVTVVICPLCAKGVRLIPDQDPNITWEKHVDTDCDPSNYEKVTKKKKCPAPLCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNGSRKEASKPNLTSTTSSKWTTSLLNVASNLRASAEAGMTKLSGEINQAWQTARDGVGQSSGSGSGNRNDQVEQCPQCGAKFSSVSTLVDHVQKVHERNRNQSRVKKVTIDACPKCSRGFIDPVSLVQHVERDHGGSSGA 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3991g00054 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 254 IPR013087 -
Gabi3991g00054 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 292 IPR013087 -
Gabi3991g00054 293 ProSitePatterns Zinc finger C2H2 type domain signature. 228 249 IPR013087 -
Gabi3991g00054 293 MobiDBLite consensus disorder prediction 206 225 - -
Gabi3991g00054 293 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Gabi3991g00054 293 Gene3D Classic Zinc Finger 198 290 - -
Gabi3991g00054 293 Pfam C2H2-type zinc finger 227 249 - -
Gabi3991g00054 293 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Gabi3991g00054 293 SMART c2h2final6 226 249 IPR013087 -
Gabi3991g00054 293 SMART c2h2final6 264 287 IPR013087 -
Gabi3991g00054 293 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Gabi3991g00054 293 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Gabi3991g00054 293 Gene3D - 86 152 IPR035896 -
Gabi3991g00054 293 Gene3D - 2 60 IPR035896 -
Gabi3991g00054 293 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Gabi3991g00054 293 SUPERFAMILY beta-beta-alpha zinc fingers 227 283 IPR036236 -
Gabi3991g00054 293 SUPERFAMILY AN1-like Zinc finger 85 142 IPR035896 -
Gabi3991g00054 293 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Gabi3991g00054 293 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Gabi3991g00054 293 FunFam Zinc finger AN1 domain-containing stress-associated protein 12 86 151 - -
Gabi3991g00054 293 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Gabi3991g00054 293 ProSitePatterns Zinc finger C2H2 type domain signature. 266 287 IPR013087 -
Gabi3991g00054 293 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3991g00054 Gabi-Chr3991 691515 692882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3991g00054 1 293 C2H2 Transcription Factor Family AT2G41835 62.373 9.93e-125 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi3991g00054 zf-AN1 8.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3991g00054 - - gmx:100790226 493.041